Os10g0486900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os10g0486900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.37 | 0.232 | 13.1 | 0.785 | 0.446 | 0.389 | 0.29 | -0.722 | 0.479 | 21.6 | 69.6 | 1272 | -- | -- |
| 25.19 | 0.234 | 13.1 | 0.705 | 0.438 | 0.35 | 0.401 | -- | 0.448 | 21.6 | 89.6 | 1270 | -- | -- |
| 24.57 | 0.231 | 13.1 | 0.806 | 0.459 | 0.416 | -- | -0.855 | 0.487 | 21.6 | 73.02 | 1230 | -- | -- |
| 25.89 | 0.237 | 13.1 | 0.689 | 0.468 | 0.37 | -- | -- | 0.445 | 21.5 | 281.8 | 1227 | -- | -- |
| 33.45 | 0.271 | 13.1 | 0.64 | -- | 0.334 | -- | 0.07 | 0.363 | -- | 73.02 | 1230 | -- | -- |
| 29.14 | 0.253 | 13.1 | 0.652 | 0.357 | -- | 0.405 | -- | 0.369 | 21.2 | -- | -- | -- | -- |
| 29.72 | 0.255 | 13.1 | 0.638 | 0.356 | -- | -- | -- | 0.368 | 21.2 | -- | -- | -- | -- |
| 33.46 | 0.271 | 13.1 | 0.638 | -- | 0.334 | -- | -- | 0.363 | -- | 281.8 | 1227 | -- | -- |
| 34.87 | 0.275 | 13.1 | -- | 0.366 | 0.407 | -- | -- | 0.358 | 21.3 | 277.7 | 32830 | -- | -- |
| 37.04 | 0.284 | 13.1 | 0.639 | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
| 40.43 | 0.297 | 13.1 | -- | 0.356 | -- | -- | -- | 0.297 | 21.3 | -- | -- | -- | -- |
| 42.42 | 0.303 | 13.1 | -- | -- | 0.392 | -- | -- | 0.391 | -- | 276.3 | 30527 | -- | -- |
| 47.81 | 0.323 | 13.1 | -- | -- | -- | -- | -- | 0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.51 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 23.43 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 8 | 23.74 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 12 | 23.94 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 20 | 24.14 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 23 | 24.15 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 67 | 24.29 | radiation | 10.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 89 | 24.44 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 107 | 24.46 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 172 | 24.53 | radiation | 10.0 | 1440 | < th | dose independent | no | NA | NA |
| 174 | 24.53 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 270 | 24.57 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 282 | 24.58 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 340 | 24.66 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 19 |
| 401 | 24.70 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 504 | 24.73 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 509 | 24.74 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 513 | 24.75 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 519 | 24.75 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 529 | 24.77 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 545 | 24.78 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 546 | 24.78 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 583 | 24.81 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 617 | 24.85 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 647 | 24.86 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 648 | 24.86 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 650 | 24.86 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 669 | 24.86 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 17 |
| 690 | 24.87 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 697 | 24.88 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 699 | 24.88 | radiation | 20.0 | 1440 | < th | dose dependent | sin | 1 | NA |
| 700 | 24.88 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 766 | 24.93 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 785 | 24.94 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 800 | 24.94 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 808 | 24.94 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 815 | 24.95 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 843 | 24.96 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 864 | 24.97 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 886 | 24.97 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 921 | 24.99 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 944 | 25.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 953 | 25.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 961 | 25.01 | wind | 7.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 967 | 25.01 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 969 | 25.01 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 974 | 25.02 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |