Os02g0753500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0753500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 298.16 | 0.811 | 3.23 | -0.205 | 0.63 | -1.08 | 1.29 | -1.7 | -0.198 | 6.19 | 23.07 | 460 | -- | -- |
| 300.62 | 0.808 | 3.26 | -0.407 | 0.619 | -0.758 | 0.923 | -- | -0.251 | 6.18 | 24.11 | 481 | -- | -- |
| 301.84 | 0.809 | 3.24 | -0.253 | 0.632 | -0.951 | -- | -1.07 | -0.213 | 6.11 | 23.4 | 455 | -- | -- |
| 302.77 | 0.81 | 3.26 | -0.402 | 0.623 | -0.772 | -- | -- | -0.254 | 6.19 | 24.1 | 478 | -- | -- |
| 321.85 | 0.836 | 3.25 | -0.234 | -- | -0.732 | -- | -0.811 | -0.183 | -- | 23.4 | 477 | -- | -- |
| 308.83 | 0.824 | 3.23 | -0.212 | 0.553 | -- | 0.975 | -- | -0.11 | 6.03 | -- | -- | -- | -- |
| 311.17 | 0.826 | 3.23 | -0.203 | 0.558 | -- | -- | -- | -0.114 | 6.02 | -- | -- | -- | -- |
| 322.49 | 0.836 | 3.27 | -0.335 | -- | -0.582 | -- | -- | -0.204 | -- | 23.9 | 501 | -- | -- |
| 306.56 | 0.815 | 3.25 | -- | 0.608 | -0.607 | -- | -- | -0.184 | 6.15 | 24.1 | 455 | -- | -- |
| 327.31 | 0.845 | 3.24 | -0.187 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 312.26 | 0.827 | 3.23 | -- | 0.555 | -- | -- | -- | -0.0911 | 6.04 | -- | -- | -- | -- |
| 325.14 | 0.84 | 3.25 | -- | -- | -0.443 | -- | -- | -0.147 | -- | 23.9 | 494 | -- | -- |
| 328.23 | 0.846 | 3.24 | -- | -- | -- | -- | -- | -0.0803 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 285.99 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 2 | 3 |
| 2 | 286.01 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 5 | 288.53 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 3 | 1 |
| 12 | 288.53 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 53 | 291.98 | humidity | 80 | 30 | < th | dose dependent | rect. | 18 | 2 |
| 67 | 292.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 68 | 292.84 | temperature | 20 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 77 | 293.16 | temperature | 20 | 90 | < th | dose independent | rect. | 20 | 1 |
| 79 | 293.19 | wind | 1 | 90 | < th | dose independent | rect. | 2 | 3 |
| 82 | 293.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 130 | 294.74 | humidity | 80 | 10 | < th | dose dependent | rect. | 18 | 11 |
| 137 | 294.94 | wind | 1 | 10 | < th | dose independent | rect. | 3 | 7 |
| 156 | 295.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 160 | 295.26 | wind | 1 | 10 | < th | dose independent | rect. | 3 | 10 |
| 173 | 295.41 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 3 |
| 181 | 295.48 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 187 | 295.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 188 | 295.62 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 3 |
| 208 | 295.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 211 | 295.94 | wind | 1 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 215 | 295.98 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 18 | 1 |
| 220 | 296.07 | wind | 1 | 10 | < th | dose independent | rect. | 3 | 3 |
| 230 | 296.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 8 |
| 244 | 296.36 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 250 | 296.40 | wind | 1 | 10 | < th | dose independent | rect. | 3 | 5 |
| 259 | 296.51 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 18 | 3 |
| 298 | 296.74 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 11 | 17 |
| 311 | 296.86 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 8 |
| 312 | 296.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 313 | 296.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 322 | 296.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 326 | 296.91 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 344 | 297.01 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 375 | 297.16 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 378 | 297.18 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 16 | 12 |
| 394 | 297.27 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 22 | 6 |
| 398 | 297.29 | temperature | 25 | 270 | < th | dose dependent | sin | 7 | NA |
| 421 | 297.42 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 8 |
| 429 | 297.45 | wind | 1 | 10 | > th | dose independent | sin | 5 | NA |
| 435 | 297.46 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 439 | 297.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 453 | 297.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 456 | 297.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 460 | 297.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 471 | 297.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 487 | 297.63 | wind | 9 | 720 | < th | dose independent | rect. | 5 | 16 |
| 489 | 297.64 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 24 | 4 |
| 492 | 297.66 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 493 | 297.66 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 20 | 8 |
| 515 | 297.78 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 540 | 297.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 554 | 297.85 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 21 |
| 605 | 298.03 | humidity | 90 | 10 | > th | dose independent | rect. | 22 | 1 |
| 644 | 298.11 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 8 |
| 647 | 298.12 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 14 |
| 665 | 298.15 | humidity | 70 | 1440 | > th | dose independent | sin | 13 | NA |
| 687 | 298.21 | wind | 9 | 720 | < th | dose independent | rect. | 1 | 16 |
| 708 | 298.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 13 |
| 711 | 298.26 | wind | 9 | 720 | < th | dose independent | rect. | 9 | 8 |
| 715 | 298.28 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 18 | 10 |
| 816 | 298.53 | temperature | 25 | 10 | > th | dose independent | rect. | 3 | 8 |
| 825 | 298.55 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 831 | 298.56 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 2 |
| 843 | 298.58 | temperature | 15 | 90 | > th | dose independent | rect. | 5 | 23 |
| 858 | 298.61 | wind | 1 | 10 | < th | dose independent | sin | 4 | NA |
| 870 | 298.64 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 23 | 8 |
| 885 | 298.66 | wind | 1 | 10 | > th | dose independent | rect. | 24 | 15 |
| 889 | 298.66 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 20 |
| 904 | 298.69 | wind | 1 | 10 | < th | dose independent | rect. | 24 | 13 |
| 906 | 298.69 | radiation | 1 | 4320 | < th | dose dependent | rect. | 1 | 3 |
| 940 | 298.77 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 959 | 298.78 | wind | 3 | 10 | < th | dose dependent | rect. | 4 | 2 |