FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0218200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thioredoxin domain 2 containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.66 (0.0374) R2 : 0.26
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.56 (0.124) R2dE : 0.272 R2E : 0.251
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.161 (0.0802) R2dN8 : 0.00887 R2N8 : -0.012
σ : 0.698
deviance : 224.77
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 65.35
memory length : 920
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
199.97 0.664 4.64 0.638 0.629 -1.19 -0.535 0.443 0.32 21.6 62.28 1200 -- --
200.26 0.659 4.64 0.654 0.619 -1.16 -0.583 -- 0.308 21.6 62.42 1178 -- --
200.91 0.66 4.65 0.647 0.617 -1.2 -- 0.628 0.318 21.6 62.51 1172 -- --
201.52 0.661 4.64 0.678 0.623 -1.15 -- -- 0.307 21.6 62.62 1178 -- --
211.97 0.678 4.64 0.671 -- -1.56 -- 0.781 0.277 -- 64.98 909 -- --
244.64 0.733 4.7 0.877 0.775 -- -0.373 -- 0.0368 22.3 -- -- -- --
245.2 0.733 4.7 0.892 0.777 -- -- -- 0.0378 22.3 -- -- -- --
212.44 0.679 4.64 0.692 -- -1.49 -- -- 0.227 -- 65.27 911 -- --
213.28 0.68 4.65 -- 0.608 -1.25 -- -- 0.256 21.6 62.81 1172 -- --
282.03 0.785 4.68 0.904 -- -- -- -- 0.0402 -- -- -- -- --
266.17 0.763 4.73 -- 0.782 -- -- -- -0.0615 22.4 -- -- -- --
224.77 0.698 4.66 -- -- -1.56 -- -- 0.161 -- 65.35 920 -- --
303.6 0.813 4.71 -- -- -- -- -- -0.0602 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.62 radiation 30 1440 < th dose independent rect. 15 19
2 203.62 humidity 60 720 > th dose independent rect. 24 21
5 204.28 humidity 60 720 > th dose independent rect. 6 15
6 204.47 humidity 60 1440 < th dose independent rect. 11 2
7 204.69 humidity 60 720 > th dose independent rect. 15 22
8 204.79 humidity 60 1440 > th dose independent rect. 11 2
12 205.11 humidity 60 720 > th dose independent rect. 6 21
13 205.14 humidity 60 720 > th dose independent rect. 10 17
14 205.14 humidity 60 720 > th dose independent rect. 24 18
15 205.15 humidity 60 720 > th dose independent rect. 9 9
20 205.35 temperature 25 1440 > th dose dependent rect. 13 1
22 205.50 radiation 20 1440 > th dose dependent rect. 15 18
25 205.58 temperature 20 1440 > th dose dependent rect. 7 14
34 205.70 humidity 70 720 < th dose dependent rect. 17 22
43 205.83 radiation 30 1440 < th dose independent rect. 8 2
46 205.86 radiation 30 1440 < th dose independent sin 12 NA
66 206.02 temperature 20 1440 > th dose dependent rect. 6 9
67 206.03 temperature 20 1440 > th dose dependent sin 22 NA
70 206.05 humidity 60 1440 > th dose independent rect. 10 6
72 206.06 radiation 10 1440 > th dose dependent sin 11 NA
87 206.19 humidity 60 1440 > th dose independent rect. 18 22
105 206.28 humidity 60 720 > th dose independent rect. 9 12
110 206.31 humidity 60 720 > th dose independent sin 0 NA
122 206.37 humidity 60 1440 > th dose independent sin 2 NA
151 206.55 humidity 60 1440 > th dose independent rect. 3 13
153 206.55 humidity 60 1440 > th dose independent rect. 21 19
154 206.55 humidity 60 1440 < th dose independent rect. 18 21
158 206.57 humidity 60 1440 > th dose independent rect. 7 9
176 206.59 radiation 40 1440 < th dose dependent rect. 15 19
183 206.62 temperature 20 1440 > th dose dependent rect. 9 5
203 206.70 radiation 30 1440 < th dose independent rect. 3 7
215 206.74 radiation 30 1440 < th dose independent rect. 21 13
221 206.77 radiation 30 1440 < th dose independent rect. 18 16
244 206.82 humidity 60 1440 < th dose independent sin 2 NA
254 206.83 temperature 20 4320 > th dose dependent rect. 17 1
266 206.86 temperature 25 1440 > th dose dependent rect. 12 7
288 206.94 radiation 30 1440 > th dose independent rect. 15 19
294 206.95 humidity 60 1440 > th dose independent rect. 10 23
384 207.10 humidity 60 1440 > th dose independent rect. 3 21
432 207.14 humidity 60 1440 > th dose independent no NA NA
577 207.25 temperature 25 4320 < th dose independent rect. 2 13
590 207.27 temperature 20 4320 > th dose dependent rect. 15 6
601 207.30 humidity 70 1440 < th dose dependent rect. 11 2
614 207.33 humidity 70 720 < th dose dependent no NA NA
617 207.33 humidity 70 720 < th dose dependent rect. 6 14
670 207.33 humidity 70 720 < th dose dependent rect. 9 23
721 207.38 temperature 20 720 > th dose dependent rect. 12 22
789 207.45 humidity 70 720 < th dose dependent sin 0 NA
838 207.51 temperature 25 4320 < th dose independent rect. 22 18
923 207.58 radiation 40 1440 < th dose dependent sin 11 NA
941 207.60 radiation 40 720 < th dose independent rect. 24 17
958 207.61 radiation 40 720 < th dose independent rect. 9 18
959 207.61 humidity 60 1440 < th dose independent rect. 10 23
985 207.64 radiation 40 720 < th dose independent rect. 24 23