BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0203500 Os05g0203500|AK064593
(352 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0203500 Conserved hypothetical protein 666 0.0
Os08g0459400 Transposase, IS4 domain containing protein 407 e-114
Os05g0182900 Hypothetical protein 268 6e-72
Os05g0118600 144 7e-35
Os03g0141100 Conserved hypothetical protein 109 2e-24
Os05g0208600 108 5e-24
Os03g0157450 Similar to Transposase (Fragment) 106 3e-23
Os06g0210700 99 4e-21
Os11g0632200 Conserved hypothetical protein 69 4e-12
Os11g0586500 66 5e-11
Os08g0496700 65 9e-11
>Os05g0203500 Conserved hypothetical protein
Length = 352
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/352 (92%), Positives = 326/352 (92%)
Query: 1 MDIGEXXXXXXXXXXXXNLAAGRAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHT 60
MDIGE NLAAGRAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHT
Sbjct: 1 MDIGESKGKGRGKGKSSNLAAGRAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHT 60
Query: 61 ACTLAINSKYGTTYTVDQVQHHYRRHKENWSLVARHLNESGNGWDETTKMLTLSQATLDA 120
ACTLAINSKYGTTYTVDQVQHHYRRHKENWSLVARHLNESGNGWDETTKMLTLSQATLDA
Sbjct: 61 ACTLAINSKYGTTYTVDQVQHHYRRHKENWSLVARHLNESGNGWDETTKMLTLSQATLDA 120
Query: 121 LLINDRGILSKPIQFFDKLQELFSGCSADGAFMEDPSSAAXXXXXXXXXXXXXXLNDMST 180
LLINDRGILSKPIQFFDKLQELFSGCSADGAFMEDPSSAA LNDMST
Sbjct: 121 LLINDRGILSKPIQFFDKLQELFSGCSADGAFMEDPSSAADFDDEDDEDDKFDFLNDMST 180
Query: 181 YADTKVPQGEDFDKLESDSDDCKEVAALSAATIQVSSSTNYDLKPNKKNFKRCGKPKTLP 240
YADTKVPQGEDFDKLESDSDDCKEVAALSAATIQVSSSTNYDLKPNKKNFKRCGKPKTLP
Sbjct: 181 YADTKVPQGEDFDKLESDSDDCKEVAALSAATIQVSSSTNYDLKPNKKNFKRCGKPKTLP 240
Query: 241 QSHNDKCNKTKAKSTAQVHDSDDVDVLINNTLVGIKNTLEKPIQTVAPQDPNIPLWDMLK 300
QSHNDKCNKTKAKSTAQVHDSDDVDVLINNTLVGIKNTLEKPIQTVAPQDPNIPLWDMLK
Sbjct: 241 QSHNDKCNKTKAKSTAQVHDSDDVDVLINNTLVGIKNTLEKPIQTVAPQDPNIPLWDMLK 300
Query: 301 KIALDPDDKLRVGLHLCKPELQANRSFLISMGQEYLEHWIYKFLSGDDPNLG 352
KIALDPDDKLRVGLHLCKPELQANRSFLISMGQEYLEHWIYKFLSGDDPNLG
Sbjct: 301 KIALDPDDKLRVGLHLCKPELQANRSFLISMGQEYLEHWIYKFLSGDDPNLG 352
>Os08g0459400 Transposase, IS4 domain containing protein
Length = 705
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/361 (62%), Positives = 246/361 (68%), Gaps = 58/361 (16%)
Query: 1 MDIGEXXXXXXXXXXXXNLAAG---RAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKI 57
MDIG G R+KPINWP A SEFLLD YIEKKL+LPPK VIKK+
Sbjct: 393 MDIGGSNKHGKGKSKARKGVGGSGVRSKPINWPPAFSEFLLDCYIEKKLELPPKGVIKKM 452
Query: 58 HHTACTLAINSKYGTTYTVDQVQHHYRRHKENWSLVARHLNESGNGWDETTKMLTLSQAT 117
HHTACT AIN+KYG+TY VDQ
Sbjct: 453 HHTACTSAINAKYGSTYNVDQ--------------------------------------- 473
Query: 118 LDALLINDRGILSKPIQFFDKLQELFSGCSADGAFMEDPSSAAXXXXXXXXXXXXXXLND 177
INDRGILSKPIQFFDKLQELFSG SADGAFMEDPSS A ND
Sbjct: 474 -----INDRGILSKPIQFFDKLQELFSGSSADGAFMEDPSSVADFDDEADELDT---FND 525
Query: 178 MSTYADTKVPQGEDFDKLESDSDDCKEVAALSAATI-------QVSSSTNYDLKPNKKNF 230
MSTYA+TK PQGED DKLE+DSDDCKEVAAL+AAT QVSSS LKPNKK+F
Sbjct: 526 MSTYAETKYPQGEDSDKLEADSDDCKEVAALNAATAALNAATSQVSSSHTSGLKPNKKSF 585
Query: 231 KRCGKPKTLPQSHNDKCNKTKAKSTAQVHDSDDVDVLINNTLVGIKNTLEKPIQTVAPQD 290
K+CGKPKTLPQSHNDK K KAKS++ +HD DD+DVLI +TLVGIK+ L KPIQT APQD
Sbjct: 586 KKCGKPKTLPQSHNDK-GKLKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTAAPQD 644
Query: 291 PNIPLWDMLKKIALDPDDKLRVGLHLCKPELQANRSFLISMGQEYLEHWIYKFLSGDDPN 350
PN PLWDMLKKIAL+P+DK+RVGLHLCKPE QA+RSFLISMGQEYLE W+YKFLSGDD
Sbjct: 645 PNAPLWDMLKKIALEPEDKMRVGLHLCKPEFQAHRSFLISMGQEYLERWVYKFLSGDDTG 704
Query: 351 L 351
L
Sbjct: 705 L 705
>Os05g0182900 Hypothetical protein
Length = 346
Score = 268 bits (684), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 155/348 (44%), Positives = 202/348 (58%), Gaps = 34/348 (9%)
Query: 23 RAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHTACTLAINSKYGTTYTVDQVQHH 82
RA+ NWP +S+F+LDWY++KK ++PPK KK+HH CT +N+++ TT+TVDQV H
Sbjct: 11 RARATNWPTVMSKFVLDWYLQKKKEMPPKTKFKKMHHHYCTTVLNARFETTFTVDQVHRH 70
Query: 83 YRRHKENWSLVARHLNESGNGWDETTKMLTLSQATLDALLINDRGILSKPIQFFDKLQEL 142
+RR KE W++VAR++N SG+ +D+ KML L +TL +L I +R IL KPI FFD +Q L
Sbjct: 71 FRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVKPIPFFDHIQAL 130
Query: 143 FSGCSADGAFMEDPSSAAXXXXXXXXXXXXXXLNDMSTYADTKVPQGEDFDKLE-SDSDD 201
F S D A + DP AA LN M+ AD + P G D DK D DD
Sbjct: 131 FGEWSVDAAPVTDPIEAA--DINDDDMEILDPLNMMANCADARDPDGADLDKFVLEDEDD 188
Query: 202 CKEVAA------------LSAATIQVSS----STNYDLKPNKKNFKRCGKPKTLPQSHND 245
C EVAA SA + Q S ST LKP K K + KT P
Sbjct: 189 CHEVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTKTTPNP--- 245
Query: 246 KCNKTKAKSTAQV-HDSDDVDVLINNTLVGIKNTLEKPIQTVAP--QDPNIPLWDMLKKI 302
K A V HD D ++ +TL GI +T KPI+ AP DPN PLW+MLK+I
Sbjct: 246 -------KPQAPVPHDGRKAD-MVKSTLAGIHDTPAKPIR-AAPTSSDPNAPLWNMLKEI 296
Query: 303 ALDPDDKLRVGLHLCKPELQANRSFLISMGQEYLEHWIYKFLSGDDPN 350
L P D+L VG+ LCKPE + +RSF ++MG+EYLE W +KFLSG +P
Sbjct: 297 PLTPADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFLSGGEPG 344
>Os05g0118600
Length = 319
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 155/332 (46%), Gaps = 31/332 (9%)
Query: 20 AAGRAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHTACTLAINSKYGTTYTVDQV 79
+ R + I+W ++F+LDWYIE K + K HH C A+N ++ T QV
Sbjct: 14 GSSRERSISWDDEQTKFMLDWYIEYKKDQHANFIWKSQHHMKCADALNKEFAMGVTSAQV 73
Query: 80 QHHYRRHKENWSLVARHLNESGNGWDETTKMLTLSQATLDALLINDRGILSKPIQFFDKL 139
HYR +KENW +V LN+SGNG+D LT+S++ L DR +LSKPI++F ++
Sbjct: 74 TRHYRHYKENWKIVETALNKSGNGFDAIKCKLTISESEKATLKDRDRRLLSKPIKYFHEM 133
Query: 140 QELFSGCSADGAFMEDPSSAAXXXXXXXXXXXXXXLNDMSTYADTKVPQGEDFDKLESDS 199
QELFSG +ADG+ D + LND+S+YA ED D L S +
Sbjct: 134 QELFSGSNADGSLAMDQQTCC-DVDNKSDSSDDEGLNDISSYARPIDIAAEDSDTLPSPT 192
Query: 200 DDCKEVAALSAATIQVSSSTNYDLKPNKKNFKRCGKPKTLPQSHNDKCNKTKAKSTAQVH 259
C + SS T+ R GK + P+ K + K +
Sbjct: 193 --CADNG---------SSGTS-----------RAGKKR--PRGSKSPSKKQQPKPKNRFT 228
Query: 260 DSDDVDVLINNTLVGIKNTLEKPIQTVAPQ---DPNIPLWDMLKKIALDPDDKLRVGLHL 316
D+ + I+NT+ + + L P DP LW + + + +DK+ VG +L
Sbjct: 229 DATEK---ISNTMDHLVDQLGNPPPPPPVPQFCDPYASLWKRIDALPISTNDKVVVGNYL 285
Query: 317 CKPELQANRSFLISMGQEYLEHWIYKFLSGDD 348
+ E + R FL S +E W+Y+F+ D
Sbjct: 286 GRQENEGVRGFLASSADTTVETWVYQFMCDRD 317
>Os03g0141100 Conserved hypothetical protein
Length = 321
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 133/329 (40%), Gaps = 36/329 (10%)
Query: 20 AAGRAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHTACTLAINSKYGTTYTVDQV 79
R K I W ++F+L+WYI + P +K HH C A+N K G QV
Sbjct: 12 GGSREKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRVNRSQV 71
Query: 80 QHHYRRHKENWSLVARHLNESGNGWDETTKMLTL--SQATLDALLINDRGILSKPIQFFD 137
H+R KE WS + L +SG G+D T+ + S+ + L L+KPI+FF
Sbjct: 72 HRHFRLCKEKWSWICAALGKSGYGFDATSCKFNIDPSEKEANKLGTTKYNYLTKPIKFFH 131
Query: 138 KLQELFSGCS-ADGAFMEDPSSAAXXXXXXXXXXXXXXLNDMSTYADTKVPQGEDFDKLE 196
+ELF GCS ADG+ D +A + ++ Y P L+
Sbjct: 132 LFEELFVGCSKADGSLAMDQFTA----NTSSDSDGSGSIKELEEYT---FP-------LQ 177
Query: 197 SDSDDCKEVAALSAATIQVSSSTNYDLKPNKKNFKRCGKPKTLPQSHNDKCNKTKAKSTA 256
+D + S T SS G+ + +S K K K
Sbjct: 178 DGGNDSDTIPRYSPTTDATSS----------------GQKRKFVKSPTKKIVKHKTSRHK 221
Query: 257 QVHDSDDVDVL-INNTLVGIKNTLEKPIQTVAPQDPNIPLWDMLKKIALDPDDKLRVGLH 315
D +L + N+L ++ + +V DPN +W ++ + + DK+ + +
Sbjct: 222 AEEDELIASILRLANSLASAQSVASVEVPSVG--DPNASIWKRIEDLTIPASDKIELAIF 279
Query: 316 LCKPELQANRSFLISMGQEYLEHWIYKFL 344
L KPE + RS+L E + W+ +
Sbjct: 280 LTKPEQECFRSYLRVASDESFQAWVIDYF 308
>Os05g0208600
Length = 736
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 133/329 (40%), Gaps = 36/329 (10%)
Query: 20 AAGRAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHTACTLAINSKYGTTYTVDQV 79
R K I W ++F+L+WYI + P +K HH C A+N K G QV
Sbjct: 427 GGSREKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRVNRSQV 486
Query: 80 QHHYRRHKENWSLVARHLNESGNGWDETTKMLTL--SQATLDALLINDRGILSKPIQFFD 137
H+R KE WS + L +SG G+D T+ + S+ + L L+KPI+FF
Sbjct: 487 HRHFRLCKEKWSWICAALGKSGYGFDATSCKFNIDPSEKEANKLGTTKYNYLTKPIKFFH 546
Query: 138 KLQELFSGCS-ADGAFMEDPSSAAXXXXXXXXXXXXXXLNDMSTYADTKVPQGEDFDKLE 196
+ELF GCS ADG+ D +A + ++ Y P L+
Sbjct: 547 LFEELFVGCSKADGSLAMDQFTA----NTSSDSDGSGSIKELEEYT---FP-------LQ 592
Query: 197 SDSDDCKEVAALSAATIQVSSSTNYDLKPNKKNFKRCGKPKTLPQSHNDKCNKTKAKSTA 256
+D + S T SS G+ + +S K K K
Sbjct: 593 DGGNDSDTIPRYSPTTDATSS----------------GQKRKFVKSPTKKIVKHKTSRHK 636
Query: 257 QVHDSDDVDVL-INNTLVGIKNTLEKPIQTVAPQDPNIPLWDMLKKIALDPDDKLRVGLH 315
D +L + N+L ++ + +V DPN +W ++ + + DK+ + +
Sbjct: 637 AEEDELIASILRLANSLASAQSVASVEVPSVG--DPNASIWKRIEDLTIPASDKIELAIF 694
Query: 316 LCKPELQANRSFLISMGQEYLEHWIYKFL 344
L KPE + RS+L E + W+ +
Sbjct: 695 LTKPEQECFRSYLRVASDESFQAWVIDYF 723
>Os03g0157450 Similar to Transposase (Fragment)
Length = 611
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 40/328 (12%)
Query: 20 AAGRAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHTACTLAINSKYGTTYTVDQV 79
R K I+W ++F+L+WYIE + P KK HH C +A+ K+G T QV
Sbjct: 307 GGSREKYISWSDDATQFMLEWYIELRKDKPSTFKWKKQHHQQCAIALKDKFGIRVTKSQV 366
Query: 80 QHHYRRHKENWSLVARHLNESGNGWDETTKMLTLSQATLDA--LLINDRGILSKPIQFFD 137
H R KE WS + L +SG G+D + + + D+ L L+KPI+FF
Sbjct: 367 HRHLRLCKEKWSWICVALGKSGYGFDAASCKFNIDPSEKDSNKLGTTKYNYLTKPIKFFH 426
Query: 138 KLQELFSGCS-ADGAFMEDPSSAAXXXXXXXXXXXXXXLNDMSTYADTKVPQGEDFDKLE 196
+ELF GCS ADG+ D +A + ++ Y G D D +
Sbjct: 427 LFEELFVGCSKADGSLAIDQFNA----NGSSDSDGSGSIKELEEYIFALEDGGHDSDTIA 482
Query: 197 SDSDDCKEVAALSAATIQVSSSTNYDLKPNKKNFKRCGKPKTLPQSHNDKCNKTKAKSTA 256
+ S +T+ +K+ + KTL K K++
Sbjct: 483 RN-----------------SPTTDGTYSGHKRRSVKSPTKKTL-----------KHKTSH 514
Query: 257 QVHDSDDVDVLINNTLVGIKNTLEKPIQTVAPQDPNIPLWDMLKKIALDPDDKLRVGLHL 316
+ + D+ + +++ + N L Q++ DPN +W ++ + + DK+ + L
Sbjct: 515 KEEEQDE----LAGSILKLANKLASVEQSIVG-DPNASIWRRIEDLTIPASDKIELATFL 569
Query: 317 CKPELQANRSFLISMGQEYLEHWIYKFL 344
KPE + RS+L + W+ +L
Sbjct: 570 AKPEQEIFRSYLRVASDASFQAWVIDYL 597
>Os06g0210700
Length = 680
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 135/328 (41%), Gaps = 40/328 (12%)
Query: 20 AAGRAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHTACTLAINSKYGTTYTVDQV 79
R K I+W ++F+L+WYIE P KK HH C +A+ K+G T QV
Sbjct: 376 GGSREKYISWSDDATQFMLEWYIELCKDKPSTFKWKKQHHQQCAIALKDKFGIRVTKSQV 435
Query: 80 QHHYRRHKENWSLVARHLNESGNGWDETTKMLTLSQATLDA--LLINDRGILSKPIQFFD 137
H R KE WS + L +SG G+D + + + D+ L L+KPI+FF
Sbjct: 436 HRHLRLCKEKWSWICAALGKSGYGFDAASCKFNIDPSEKDSNKLGTTKYNYLTKPIKFFH 495
Query: 138 KLQELFSGCS-ADGAFMEDPSSAAXXXXXXXXXXXXXXLNDMSTYADTKVPQGEDFDKLE 196
+ELF GCS ADG+ D +A + ++ Y G D D +
Sbjct: 496 PFEELFIGCSKADGSLAIDRFNA----NGSSDSDGSGSIKELEEYIFALEDGGHDSDTIA 551
Query: 197 SDSDDCKEVAALSAATIQVSSSTNYDLKPNKKNFKRCGKPKTLPQSHNDKCNKTKAKSTA 256
+ S +T+ +K+ + KTL K K++
Sbjct: 552 RN-----------------SPTTDGTYSGHKRRSVKSPTKKTL-----------KHKTSH 583
Query: 257 QVHDSDDVDVLINNTLVGIKNTLEKPIQTVAPQDPNIPLWDMLKKIALDPDDKLRVGLHL 316
+ + D+ + +++ + N L Q++ PN +W ++ + + DK+ + L
Sbjct: 584 KEEEQDE----LAGSILKLANKLALVEQSIV-GGPNASIWRRIEDLTIPASDKIELATFL 638
Query: 317 CKPELQANRSFLISMGQEYLEHWIYKFL 344
KPE + RS+L + W+ +
Sbjct: 639 AKPEQEIFRSYLRVASDASFQAWVIDYF 666
>Os11g0632200 Conserved hypothetical protein
Length = 81
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 37/47 (78%)
Query: 254 STAQVHDSDDVDVLINNTLVGIKNTLEKPIQTVAPQDPNIPLWDMLK 300
+T +H DDVD LI NTLVGIKN L+KPIQT AP DPN PLW+MLK
Sbjct: 33 NTNTLHGDDDVDGLITNTLVGIKNNLDKPIQTAAPPDPNAPLWNMLK 79
>Os11g0586500
Length = 229
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 96/226 (42%), Gaps = 32/226 (14%)
Query: 122 LINDRGILSKPIQFFDKLQELFSGCSADGAFMEDPSSAAXXXXXXXXXXXXXXLNDMSTY 181
L DR +L+KPI++F ++QELFSG +A+G+ D LNDMSTY
Sbjct: 25 LDGDRRLLAKPIKYFYEMQELFSGSNANGSLAID-QQTCYNIDRKFDSSDHEGLNDMSTY 83
Query: 182 ADTKVPQGEDFDKLESDSDDCKEVAALSAATIQVSSSTNYDLKPNKKNFKRCGKPKTLPQ 241
A ED D L S + C + S T +VS D+K KR KPK+
Sbjct: 84 AHPINIAKEDSDTLPSPT--CPD--NFSPGTSRVSKKRPRDVKSPS---KRQPKPKSR-- 134
Query: 242 SHNDKCNKTKAKSTAQVHDSDDVDVLINNTLVGIKNTLEKPIQTVAPQ--DPNIPLWDML 299
DV I NT+ + N L P PQ DP +W +
Sbjct: 135 -------------------FTDVTEKIGNTMDRLVNQLASPPPPPMPQLRDPYATMWKRM 175
Query: 300 KKIALDPDDKLRVGLHLCKPELQANRSFLISMGQEYLE-HWIYKFL 344
+ + DK+ VG +L + E + R FL + LE W YK++
Sbjct: 176 DALPIGSKDKVVVGNYLGRQEKEGVRGFLAASCDTTLETEWKYKWV 221
>Os08g0496700
Length = 815
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 27 INWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHTACTLAINSKYGTTYTVDQVQHHYRRH 86
+ W + E +L +Y EK L + V K++HH C IN KY T +T QV H + +
Sbjct: 533 VVWQPQVVEEMLRYYKEKILADGRQLVFKEVHHEECAKQINGKYHTNFTSRQVYHKFHKL 592
Query: 87 KENWSLVARHLNESGNGWDETTKMLTLSQATLDALLINDR----GILSKPIQFFDKLQEL 142
K W ++ N SG +D+ K + L T + N + ++ PI+++D+++ +
Sbjct: 593 KAQWKVIMEAKNLSGANFDDVEKKI-LYDETEVVRMTNAKDKRAKFINVPIRWYDEMEFI 651
Query: 143 FSGCSADGAF--MEDP 156
F A G F M+ P
Sbjct: 652 FQDKHATGEFNVMQTP 667
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,523,655
Number of extensions: 447554
Number of successful extensions: 1151
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1146
Number of HSP's successfully gapped: 12
Length of query: 352
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 250
Effective length of database: 11,709,973
Effective search space: 2927493250
Effective search space used: 2927493250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)