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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0203500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0455) R2 : 0.00485
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.143 (0.0958) R2dN8 : 0.00626 R2N8 : 0.00485
σ : 0.857
deviance : 337.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.02 0.833 3.09 -0.455 0.294 -0.176 -0.627 -3.68 -0.112 8.25 5.195 4107 -- --
320.99 0.841 3.18 -0.497 0.339 0.253 -0.833 -- -0.214 6.73 5.195 4107 -- --
315.22 0.827 3.09 -0.458 0.294 -0.156 -- -3.59 -0.0998 8.27 5.158 4180 -- --
320.18 0.833 3.19 -0.431 0.291 0.445 -- -- -0.308 8.8 7 5869 -- --
319.63 0.833 3.09 -0.441 -- -0.127 -- -3.53 -0.0928 -- 5.35 4361 -- --
323.21 0.843 3.18 -0.555 0.287 -- -0.6 -- -0.211 7.74 -- -- -- --
324.16 0.843 3.18 -0.569 0.286 -- -- -- -0.209 8.24 -- -- -- --
324.51 0.839 3.2 -0.343 -- 0.459 -- -- -0.28 -- 7.017 5842 -- --
322.2 0.836 3.2 -- 0.287 0.637 -- -- -0.287 8.42 7.1 5857 -- --
328.68 0.847 3.18 -0.566 -- -- -- -- -0.206 -- -- -- -- --
332.67 0.853 3.16 -- 0.284 -- -- -- -0.146 8.39 -- -- -- --
326.86 0.842 3.2 -- -- 0.628 -- -- -0.278 -- 7.047 5843 -- --
337.15 0.857 3.17 -- -- -- -- -- -0.143 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.35 temperature 30.0 90 > th dose dependent rect. 10 1
2 309.62 radiation 1.0 4320 > th dose independent rect. 18 14
3 309.63 radiation 1.0 4320 < th dose independent rect. 18 14
6 309.92 radiation 1.0 4320 < th dose independent rect. 23 9
8 309.94 radiation 1.0 4320 < th dose independent rect. 4 4
11 309.95 radiation 1.0 4320 > th dose independent rect. 4 4
26 309.98 humidity 90.0 14400 > th dose dependent rect. 6 1
51 310.66 radiation 1.0 4320 > th dose independent rect. 18 18
53 310.67 radiation 1.0 4320 < th dose independent rect. 18 18
57 310.88 wind 1.0 4320 > th dose dependent rect. 18 1
58 310.89 wind 7.0 4320 < th dose independent rect. 15 1
59 310.89 wind 9.0 4320 < th dose dependent rect. 18 1
60 310.92 radiation 1.0 4320 > th dose independent sin 8 NA
61 310.94 humidity 50.0 14400 > th dose dependent rect. 23 1
64 310.98 radiation 1.0 4320 < th dose independent sin 8 NA
69 310.99 humidity 90.0 14400 < th dose dependent rect. 22 3
70 310.99 humidity 50.0 14400 > th dose dependent rect. 21 4
101 311.06 humidity 90.0 14400 < th dose dependent rect. 22 1
141 311.12 radiation 40.0 14400 < th dose independent rect. 16 8
148 311.25 radiation 10.0 4320 < th dose dependent rect. 4 1
153 311.29 radiation 40.0 4320 > th dose dependent rect. 15 1
179 311.38 wind 5.0 4320 < th dose independent rect. 18 1
209 311.50 wind 7.0 4320 > th dose independent rect. 15 1
212 311.51 wind 5.0 4320 > th dose independent rect. 18 1
215 311.57 wind 5.0 4320 > th dose independent rect. 13 1
216 311.58 humidity 90.0 14400 < th dose independent rect. 14 1
217 311.61 atmosphere 1005.0 14400 < th dose independent rect. 17 1
218 311.65 atmosphere 1005.0 14400 > th dose independent rect. 17 1
220 311.65 humidity 60.0 14400 > th dose independent rect. 20 4
230 311.75 humidity 90.0 14400 > th dose dependent rect. 5 3
232 311.78 wind 5.0 4320 > th dose dependent rect. 13 1
239 311.83 wind 5.0 4320 > th dose dependent rect. 12 9
242 311.84 wind 1.0 90 < th dose dependent rect. 23 3
277 311.96 wind 5.0 4320 > th dose independent rect. 12 10
280 311.96 humidity 50.0 14400 > th dose dependent rect. 21 11
308 312.04 wind 5.0 4320 > th dose dependent rect. 15 1
310 312.05 humidity 90.0 14400 < th dose independent rect. 22 2
312 312.05 wind 5.0 4320 > th dose independent rect. 12 13
323 312.10 radiation 20.0 10 > th dose dependent rect. 11 1
330 312.13 radiation 30.0 10 < th dose independent rect. 24 23
340 312.16 wind 5.0 4320 < th dose independent rect. 12 2
354 312.25 wind 5.0 1440 < th dose dependent rect. 11 3
355 312.26 wind 5.0 4320 > th dose independent rect. 16 5
359 312.27 humidity 60.0 14400 > th dose independent rect. 4 4
361 312.27 wind 7.0 4320 < th dose independent rect. 13 8
363 312.28 wind 5.0 4320 < th dose independent rect. 11 11
375 312.30 humidity 70.0 14400 < th dose dependent rect. 21 1
384 312.31 wind 5.0 4320 > th dose dependent rect. 15 6
390 312.32 wind 7.0 4320 < th dose independent rect. 13 6
393 312.32 radiation 1.0 4320 < th dose dependent rect. 23 10
395 312.32 radiation 1.0 4320 < th dose dependent rect. 20 13
398 312.33 wind 7.0 4320 < th dose independent rect. 15 4
409 312.36 wind 5.0 4320 < th dose independent rect. 12 13
413 312.37 atmosphere 1005.0 14400 > th dose independent rect. 15 9
434 312.41 radiation 1.0 4320 < th dose dependent rect. 4 5
450 312.42 wind 5.0 4320 > th dose dependent rect. 12 4
454 312.43 radiation 40.0 43200 > th dose independent rect. 15 1
494 312.47 wind 7.0 4320 > th dose independent rect. 13 6
506 312.48 wind 5.0 4320 > th dose dependent rect. 12 13
535 312.54 humidity 60.0 14400 > th dose independent rect. 1 7
545 312.56 wind 5.0 1440 < th dose dependent rect. 12 1
553 312.58 precipitation 0.1 14400 < th dose independent rect. 13 1
558 312.58 precipitation 0.1 14400 < th dose dependent rect. 13 1
563 312.58 radiation 1.0 4320 < th dose dependent rect. 23 13
569 312.59 radiation 1.0 4320 < th dose dependent rect. 20 16
583 312.61 wind 5.0 1440 < th dose dependent rect. 11 10
600 312.63 wind 5.0 4320 > th dose independent sin 17 NA
619 312.66 temperature 20.0 30 > th dose independent rect. 21 9
629 312.68 radiation 1.0 4320 < th dose dependent rect. 4 8
639 312.69 temperature 30.0 10 > th dose dependent rect. 12 1
665 312.72 wind 5.0 4320 > th dose independent rect. 12 19
667 312.72 humidity 80.0 14400 > th dose dependent rect. 13 18
670 312.73 temperature 20.0 30 > th dose independent rect. 21 6
675 312.74 humidity 90.0 14400 > th dose independent rect. 22 2
686 312.75 radiation 40.0 4320 > th dose independent rect. 15 1
713 312.76 wind 1.0 90 < th dose independent rect. 22 4
754 312.80 atmosphere 1005.0 14400 < th dose independent rect. 15 9
756 312.80 atmosphere 1005.0 14400 < th dose independent rect. 13 11
758 312.81 humidity 60.0 14400 > th dose independent rect. 7 1
759 312.81 humidity 70.0 4320 < th dose independent rect. 14 2
775 312.82 humidity 70.0 14400 > th dose dependent sin 12 NA
780 312.83 humidity 60.0 14400 < th dose independent rect. 6 1
782 312.83 humidity 60.0 14400 < th dose independent rect. 20 1
784 312.83 radiation 20.0 14400 > th dose independent rect. 17 1
840 312.83 humidity 60.0 14400 < th dose dependent rect. 6 1
844 312.83 radiation 20.0 14400 > th dose dependent rect. 17 1
917 312.85 radiation 1.0 4320 < th dose dependent sin 7 NA
927 312.87 humidity 90.0 4320 < th dose independent rect. 7 1
943 312.89 wind 5.0 4320 < th dose independent sin 17 NA
957 312.90 wind 5.0 4320 < th dose independent rect. 11 20