Os08g0459400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transposase, IS4 domain containing protein.
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Os08g0459400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transposase, IS4 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 238 | 0.725 | 3.86 | -1.89 | 0.536 | 1.91 | 0.414 | -2.07 | -0.408 | 4.12 | 20.41 | 1225 | -- | -- |
| 241.23 | 0.723 | 3.78 | -1.29 | 0.575 | 1.86 | 0.332 | -- | -0.228 | 4.9 | 20.1 | 1107 | -- | -- |
| 237.76 | 0.718 | 3.85 | -1.9 | 0.559 | 1.98 | -- | -2.23 | -0.411 | 5.07 | 21.25 | 1117 | -- | -- |
| 241.22 | 0.723 | 3.78 | -1.29 | 0.611 | 1.91 | -- | -- | -0.242 | 5.29 | 20.32 | 1061 | -- | -- |
| 253.09 | 0.741 | 3.86 | -1.91 | -- | 2.02 | -- | -2.25 | -0.415 | -- | 21.46 | 1184 | -- | -- |
| 335.4 | 0.859 | 3.7 | -0.672 | 0.761 | -- | 0.482 | -- | 0.159 | 3.2 | -- | -- | -- | -- |
| 336.14 | 0.859 | 3.7 | -0.682 | 0.765 | -- | -- | -- | 0.156 | 3.26 | -- | -- | -- | -- |
| 256.86 | 0.746 | 3.79 | -1.31 | -- | 1.93 | -- | -- | -0.254 | -- | 20.37 | 1182 | -- | -- |
| 279.59 | 0.779 | 3.74 | -- | 0.614 | 1.53 | -- | -- | -0.0418 | 5.15 | 21.9 | 1058 | -- | -- |
| 369.25 | 0.898 | 3.7 | -0.65 | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
| 348.41 | 0.873 | 3.68 | -- | 0.751 | -- | -- | -- | 0.232 | 3.26 | -- | -- | -- | -- |
| 295.74 | 0.801 | 3.74 | -- | -- | 1.53 | -- | -- | -0.0159 | -- | 22.12 | 1172 | -- | -- |
| 380.38 | 0.91 | 3.68 | -- | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 226.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 13 | 228.42 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 53 | 231.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 60 | 231.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 160 | 234.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 195 | 235.20 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 282 | 236.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 427 | 238.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 496 | 238.74 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 499 | 238.75 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 510 | 238.82 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 513 | 238.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 22 |
| 517 | 238.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 22 |
| 518 | 238.87 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 605 | 239.41 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 606 | 239.41 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 622 | 239.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 625 | 239.45 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 643 | 239.53 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 665 | 239.59 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 680 | 239.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 693 | 239.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 720 | 239.82 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 771 | 239.93 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 791 | 240.00 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 806 | 240.05 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 814 | 240.08 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 828 | 240.14 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 886 | 240.27 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 914 | 240.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 924 | 240.40 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 940 | 240.45 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 976 | 240.55 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 979 | 240.56 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |