BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0187600 Os05g0187600|Os05g0187600
(340 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0187600 Peptidase A1, pepsin family protein 566 e-162
Os02g0473200 Peptidase A1, pepsin family protein 107 9e-24
Os04g0337000 Peptidase A1, pepsin family protein 107 2e-23
Os04g0336942 Peptidase A1, pepsin family protein 97 2e-20
Os04g0334700 Peptidase A1, pepsin family protein 96 3e-20
Os04g0331600 Peptidase A1, pepsin family protein 70 3e-12
>Os05g0187600 Peptidase A1, pepsin family protein
Length = 340
Score = 566 bits (1459), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/340 (83%), Positives = 283/340 (83%)
Query: 1 MRGASRLAVVVGREEGASSPVDGVASDEAGFREGGERSTARRRSERFPXXXXXXXXXXXX 60
MRGASRLAVVVGREEGASSPVDGVASDEAGFREGGERSTARRRSERFP
Sbjct: 1 MRGASRLAVVVGREEGASSPVDGVASDEAGFREGGERSTARRRSERFPRVRGARRRELLR 60
Query: 61 FFPVXXXXXXXXXXXXXDPLAHAVSLGIVDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCL 120
FFPV DPLAHAVSLGIVDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCL
Sbjct: 61 FFPVERARLERASEAASDPLAHAVSLGIVDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCL 120
Query: 121 DGKRSGGIFVLGHIVGPKVRKTPLDQTSSRYRTTLLEITVGETSLSLSAGNVEIKSQNMT 180
DGKRSGGIFVLGHIVGPKVRKTPLDQTSSRYRTTLLEITVGETSLSLSAGNVEIKSQNMT
Sbjct: 121 DGKRSGGIFVLGHIVGPKVRKTPLDQTSSRYRTTLLEITVGETSLSLSAGNVEIKSQNMT 180
Query: 181 ILETGSLISYLPEKIFSDLEDISVINIGGYSCFHYERRMNSDVKWDDEDVWSHDRVKLET 240
ILETGSLISYLPEKIFSDLEDISVINIGGYSCFHYERRMNSDVKWDDEDVWSHDRVKLET
Sbjct: 181 ILETGSLISYLPEKIFSDLEDISVINIGGYSCFHYERRMNSDVKWDDEDVWSHDRVKLET 240
Query: 241 EHTTPADNTSEKTEVHXXXXXXXXXXXXAMIGALVCYARRSITKLFAMIDERMNVTGLQR 300
EHTTPADNTSEKTEVH AMIGALVCYARRSITKLFAMIDERMNVTGLQR
Sbjct: 241 EHTTPADNTSEKTEVHSGLLSRSRTRLLAMIGALVCYARRSITKLFAMIDERMNVTGLQR 300
Query: 301 GRRKRXXXXXXXXXXXXXXXXXXXXTLWKSQAAEAAPSVK 340
GRRKR TLWKSQAAEAAPSVK
Sbjct: 301 GRRKRASSSMVNPNPNASSASSSVPTLWKSQAAEAAPSVK 340
>Os02g0473200 Peptidase A1, pepsin family protein
Length = 494
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 8/140 (5%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGGIFVLGHIVGPKVRKTPLDQTS 148
+DG++G G SN+S++ QLA + K +KMFAHCLD GGIF +G++V PKV+ TPL
Sbjct: 230 LDGILGFGQSNSSMLSQLAAAGKVRKMFAHCLDTVNGGGIFAIGNVVQPKVKTTPLVPDM 289
Query: 149 SRYRTTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIFSDL--------E 200
Y L I VG T+L L + + TI+++G+ ++Y+PE ++ L +
Sbjct: 290 PHYNVILKGIDVGGTALGLPTNIFDSGNSKGTIIDSGTTLAYVPEGVYKALFAMVFDKHQ 349
Query: 201 DISVINIGGYSCFHYERRMN 220
DISV + +SCF Y ++
Sbjct: 350 DISVQTLQDFSCFQYSGSVD 369
>Os04g0337000 Peptidase A1, pepsin family protein
Length = 321
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 8/138 (5%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGGIFVLGHIVGPKVRKTPLDQTS 148
+DG++G G SNTS++ QL+ + K KK+FAHCLD GGIF +G++V PKV+ TPL
Sbjct: 173 LDGIIGFGQSNTSMLSQLSAAGKVKKIFAHCLDTINGGGIFAIGNVVQPKVKTTPLVPNM 232
Query: 149 SRYRTTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIFSDL--------E 200
Y L I VG T+L L + + + TI+++G+ ++YLPE ++ ++ +
Sbjct: 233 PHYNVNLKSIDVGGTALKLPSHMFDTGEKKGTIIDSGTTLTYLPEIVYKEIMLAVFAKHK 292
Query: 201 DISVINIGGYSCFHYERR 218
DI+ N+ + CF Y R
Sbjct: 293 DITFHNVQEFLCFQYVGR 310
>Os04g0336942 Peptidase A1, pepsin family protein
Length = 388
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 9/136 (6%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGGIFVLGHIVGPKVRKTPLDQTS 148
+DG++G G SN + + QLA + K KK+F+HCLD GGIF +G +V PKV+ TP+ + +
Sbjct: 218 IDGIIGFGNSNQTALSQLAAAGKTKKIFSHCLDSTNGGGIFAIGEVVEPKVKTTPIVKNN 277
Query: 149 SRYR-TTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIFSDL-------- 199
Y L I V T+L L A T +++GS + YLPE I+S+L
Sbjct: 278 EVYHLVNLKSINVAGTTLQLPANIFGTTKTKGTFIDSGSTLVYLPEIIYSELILAVFAKH 337
Query: 200 EDISVINIGGYSCFHY 215
DI++ + + CFH+
Sbjct: 338 PDITMGAMYNFQCFHF 353
>Os04g0334700 Peptidase A1, pepsin family protein
Length = 482
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 9/136 (6%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGGIFVLGHIVGPKVRKTPLDQTS 148
+DG++G G SN + + QLA + K KK+F+HCLD GGIF +G +V PKV+ TP+ + +
Sbjct: 218 IDGIIGFGNSNQTALSQLAAAGKTKKIFSHCLDSTNGGGIFAIGEVVEPKVKTTPIVKNN 277
Query: 149 SRYR-TTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIFSDL-------- 199
Y L I V T+L L A T +++GS + YLPE I+S+L
Sbjct: 278 EVYHLVNLKSINVAGTTLQLPANIFGTTKTKGTFIDSGSTLVYLPEIIYSELILAVFAKH 337
Query: 200 EDISVINIGGYSCFHY 215
DI++ + + CFH+
Sbjct: 338 PDITMGAMYNFQCFHF 353
>Os04g0331600 Peptidase A1, pepsin family protein
Length = 72
Score = 69.7 bits (169), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGGIFVLGHIVGPKVRKTPL 144
+DG++G G SN +L+ QLA + K KK+F+HCLD GGIF +G +V PKV+ TP+
Sbjct: 13 IDGIIGFGNSNQTLLSQLAAAGKTKKIFSHCLDSTNGGGIFAIGEVVEPKVKTTPI 68
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,380,988
Number of extensions: 333323
Number of successful extensions: 862
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 858
Number of HSP's successfully gapped: 6
Length of query: 340
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 238
Effective length of database: 11,709,973
Effective search space: 2786973574
Effective search space used: 2786973574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)