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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0334700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0173) R2 : 0.00278
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0411 (0.0364) R2dN8 : 0.00359 R2N8 : 0.00278
σ : 0.326
deviance : 48.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.81 0.315 3.27 0.0366 0.125 0.564 0.0953 -0.489 -0.014 7.2 19.43 12 -- --
44.88 0.312 3.27 0.0289 0.119 0.758 0.118 -- -0.0152 7.34 19.34 24 -- --
44.82 0.314 3.27 0.0377 0.127 0.539 -- -0.56 -0.0148 6.81 19.4 12 -- --
44.9 0.312 3.27 0.0354 0.124 0.767 -- -- -0.0153 6.97 19.35 24 -- --
45.66 0.315 3.27 0.04 -- 0.565 -- -0.476 -0.0125 -- 19.42 12 -- --
47.73 0.324 3.28 -0.0689 0.126 -- -0.15 -- -0.0521 5.21 -- -- -- --
47.75 0.324 3.28 -0.0684 0.129 -- -- -- -0.0512 5.99 -- -- -- --
45.72 0.315 3.27 0.0377 -- 0.759 -- -- -0.0129 -- 19.37 24 -- --
44.93 0.312 3.27 -- 0.126 0.743 -- -- -0.0203 6.85 19.33 24 -- --
48.61 0.326 3.28 -0.0646 -- -- -- -- -0.0482 -- -- -- -- --
47.87 0.324 3.28 -- 0.128 -- -- -- -0.0436 6.01 -- -- -- --
45.76 0.315 3.27 -- -- 0.736 -- -- -0.0181 -- 19.35 24 -- --
48.72 0.326 3.28 -- -- -- -- -- -0.0411 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.24 temperature 10.0 90 > th dose dependent rect. 3 16
4 43.39 radiation 1.0 43200 < th dose dependent rect. 3 1
6 43.41 temperature 10.0 30 > th dose dependent rect. 3 23
10 43.64 temperature 15.0 90 > th dose independent rect. 23 23
11 43.70 temperature 15.0 90 > th dose independent rect. 3 23
12 43.71 temperature 15.0 90 > th dose independent rect. 3 16
16 43.84 atmosphere 1015.0 720 < th dose independent rect. 3 8
20 43.87 wind 5.0 10 < th dose dependent rect. 20 7
21 43.88 temperature 15.0 1440 > th dose independent rect. 21 7
25 43.99 wind 7.0 90 < th dose independent rect. 3 16
26 43.99 atmosphere 1005.0 90 > th dose dependent rect. 2 1
27 44.00 wind 5.0 90 < th dose independent rect. 19 8
29 44.01 temperature 15.0 1440 > th dose independent rect. 8 9
30 44.01 radiation 1.0 4320 < th dose dependent rect. 3 1
35 44.08 temperature 15.0 1440 > th dose independent rect. 8 7
38 44.09 atmosphere 995.0 90 > th dose dependent rect. 19 8
39 44.09 temperature 15.0 10 > th dose dependent rect. 24 20
40 44.11 temperature 15.0 270 > th dose independent rect. 21 22
42 44.12 atmosphere 1000.0 90 > th dose independent rect. 3 16
43 44.12 atmosphere 1000.0 30 > th dose independent rect. 3 23
49 44.15 wind 9.0 90 < th dose dependent rect. 19 8
52 44.17 temperature 15.0 30 > th dose dependent rect. 3 19
62 44.20 precipitation 0.1 720 < th dose independent rect. 23 16
63 44.20 wind 9.0 30 < th dose independent rect. 3 23
64 44.20 precipitation 0.1 720 < th dose dependent rect. 23 16
71 44.22 temperature 10.0 270 > th dose dependent rect. 21 22
79 44.24 temperature 10.0 90 > th dose dependent rect. 23 23
80 44.25 wind 9.0 1440 < th dose independent rect. 3 1
81 44.25 temperature 10.0 1440 > th dose independent rect. 3 1
84 44.25 temperature 30.0 1440 < th dose independent rect. 3 1
88 44.25 humidity 50.0 1440 > th dose independent rect. 3 1
97 44.25 atmosphere 995.0 1440 > th dose independent rect. 3 1
98 44.25 radiation 1.0 1440 < th dose independent rect. 3 1
118 44.25 temperature 10.0 1440 > th dose independent rect. 4 23
137 44.29 temperature 15.0 1440 > th dose independent rect. 8 17
139 44.29 wind 5.0 10 < th dose dependent rect. 22 5
140 44.30 temperature 15.0 1440 > th dose independent rect. 8 5
146 44.32 wind 1.0 30 < th dose independent rect. 2 1
148 44.32 atmosphere 1005.0 10 > th dose dependent rect. 2 2
149 44.32 wind 5.0 10 < th dose dependent rect. 16 11
150 44.33 atmosphere 1015.0 1440 < th dose independent rect. 1 7
156 44.34 wind 3.0 30 < th dose dependent rect. 2 1
157 44.34 temperature 20.0 30 > th dose dependent rect. 2 1
165 44.35 temperature 15.0 270 > th dose dependent rect. 24 18
167 44.37 temperature 20.0 30 > th dose independent rect. 2 1
175 44.38 wind 3.0 90 < th dose independent rect. 22 1
176 44.38 atmosphere 1005.0 30 > th dose independent rect. 2 1
180 44.39 humidity 90.0 30 > th dose independent rect. 2 1
182 44.39 temperature 15.0 1440 > th dose independent rect. 8 20
188 44.40 temperature 15.0 1440 > th dose independent rect. 23 5
202 44.42 wind 1.0 10 < th dose independent rect. 13 14
205 44.42 atmosphere 1000.0 10 > th dose dependent rect. 19 9
212 44.43 temperature 15.0 720 > th dose independent rect. 3 8
233 44.45 humidity 60.0 30 > th dose dependent rect. 2 1
238 44.46 temperature 10.0 30 > th dose independent rect. 2 1
240 44.46 temperature 30.0 30 < th dose independent rect. 2 1
241 44.46 humidity 50.0 30 > th dose independent rect. 2 1
246 44.46 atmosphere 1010.0 30 < th dose independent rect. 2 1
248 44.46 radiation 1.0 30 < th dose independent rect. 2 1
253 44.46 precipitation 0.1 30 < th dose independent rect. 2 1
260 44.46 radiation 1.0 30 < th dose dependent rect. 2 1
265 44.46 precipitation 0.1 30 < th dose dependent rect. 2 1
268 44.47 temperature 15.0 1440 > th dose independent rect. 10 18
271 44.47 temperature 10.0 30 > th dose dependent rect. 21 23
274 44.48 temperature 15.0 1440 > th dose independent rect. 10 7
282 44.49 temperature 15.0 720 > th dose independent rect. 23 16
284 44.49 humidity 50.0 90 > th dose dependent rect. 19 8
285 44.49 wind 1.0 30 < th dose dependent rect. 13 14
289 44.50 temperature 15.0 1440 > th dose independent rect. 10 5
291 44.50 atmosphere 1015.0 1440 < th dose independent rect. 1 9
292 44.50 temperature 15.0 720 > th dose independent rect. 3 16
302 44.52 atmosphere 1015.0 90 < th dose independent rect. 19 8
303 44.52 precipitation 0.1 720 < th dose independent rect. 3 8
304 44.52 precipitation 0.1 720 < th dose dependent rect. 3 8
316 44.54 temperature 15.0 1440 > th dose independent rect. 10 3
317 44.54 precipitation 0.1 90 < th dose independent rect. 19 8
320 44.54 atmosphere 1015.0 30 < th dose dependent rect. 2 1
321 44.54 precipitation 0.1 90 < th dose dependent rect. 19 8
325 44.55 temperature 15.0 1440 > th dose independent rect. 10 15
338 44.57 temperature 15.0 1440 > th dose independent rect. 8 3
339 44.57 temperature 10.0 90 > th dose independent rect. 19 8
340 44.57 temperature 30.0 90 < th dose independent rect. 19 8
341 44.57 humidity 50.0 90 > th dose independent rect. 19 8
343 44.57 atmosphere 995.0 90 > th dose independent rect. 19 8
344 44.57 radiation 1.0 90 < th dose independent rect. 19 8
351 44.57 atmosphere 1015.0 90 < th dose independent rect. 3 16
354 44.57 radiation 1.0 90 < th dose dependent rect. 19 8
362 44.58 humidity 60.0 4320 < th dose independent rect. 18 2
382 44.59 humidity 80.0 30 > th dose independent rect. 20 7
385 44.59 temperature 15.0 1440 > th dose independent rect. 21 18
394 44.60 temperature 15.0 1440 > th dose independent rect. 21 16
410 44.62 atmosphere 1005.0 90 > th dose independent rect. 19 8
415 44.62 temperature 30.0 30 < th dose dependent rect. 2 1
423 44.63 temperature 10.0 720 > th dose dependent rect. 21 14
428 44.64 atmosphere 1015.0 1440 < th dose independent rect. 3 5
429 44.64 humidity 50.0 720 > th dose independent rect. 23 16
433 44.64 humidity 60.0 4320 < th dose dependent rect. 18 2
452 44.65 temperature 15.0 1440 > th dose independent rect. 10 1
453 44.65 humidity 60.0 1440 > th dose independent rect. 18 1
462 44.66 precipitation 0.1 30 < th dose independent rect. 3 23
467 44.66 precipitation 0.1 30 < th dose dependent rect. 3 23
491 44.68 humidity 50.0 90 > th dose independent rect. 3 16
496 44.68 temperature 10.0 720 > th dose dependent rect. 21 18
502 44.69 humidity 60.0 1440 > th dose independent rect. 18 4
540 44.70 atmosphere 1005.0 90 > th dose dependent rect. 19 4
547 44.71 humidity 60.0 1440 > th dose independent rect. 18 10
548 44.71 precipitation 0.1 90 < th dose independent rect. 3 16
550 44.71 temperature 15.0 1440 > th dose independent rect. 21 20
555 44.71 precipitation 0.1 90 < th dose dependent rect. 3 16
560 44.72 temperature 15.0 1440 > th dose independent rect. 21 14
562 44.72 wind 1.0 10 < th dose independent rect. 8 19
564 44.72 temperature 20.0 270 > th dose independent rect. 23 20
567 44.72 temperature 20.0 10 < th dose dependent rect. 23 22
568 44.73 temperature 25.0 30 > th dose independent rect. 20 4
570 44.73 wind 9.0 720 < th dose independent rect. 3 8
571 44.73 wind 9.0 720 < th dose independent rect. 15 8
578 44.73 temperature 15.0 270 > th dose independent rect. 10 23
584 44.74 wind 1.0 30 > th dose independent rect. 2 1
598 44.74 temperature 10.0 720 > th dose dependent rect. 3 8
601 44.74 temperature 30.0 720 < th dose dependent rect. 19 15
611 44.75 wind 5.0 90 < th dose dependent rect. 22 1
629 44.77 atmosphere 1015.0 1440 < th dose independent rect. 3 3
637 44.77 temperature 25.0 720 > th dose dependent rect. 3 6
681 44.78 wind 1.0 30 < th dose dependent rect. 8 19
682 44.78 temperature 30.0 10 < th dose dependent rect. 19 21
689 44.79 temperature 15.0 1440 > th dose independent rect. 16 12
697 44.79 temperature 30.0 720 < th dose dependent rect. 19 18
716 44.80 temperature 20.0 10 < th dose dependent rect. 19 18
722 44.81 atmosphere 1015.0 720 < th dose independent rect. 23 16
723 44.81 temperature 15.0 1440 > th dose independent rect. 23 18
772 44.82 temperature 20.0 10 < th dose dependent rect. 3 22
782 44.83 temperature 15.0 270 > th dose independent rect. 8 23
786 44.83 temperature 10.0 720 > th dose dependent rect. 23 12
787 44.83 temperature 20.0 10 < th dose dependent rect. 23 13
794 44.83 temperature 20.0 10 < th dose dependent rect. 11 18
843 44.85 temperature 15.0 720 > th dose independent rect. 15 8
845 44.85 temperature 15.0 720 > th dose independent rect. 15 16
847 44.85 atmosphere 1000.0 90 > th dose independent rect. 23 23
849 44.85 temperature 25.0 30 > th dose dependent rect. 20 4
850 44.85 humidity 80.0 30 > th dose dependent rect. 22 5
867 44.85 humidity 70.0 30 > th dose dependent rect. 9 18
872 44.85 temperature 20.0 10 < th dose dependent rect. 7 22
893 44.86 humidity 80.0 90 > th dose independent rect. 8 19
898 44.86 temperature 15.0 720 > th dose dependent rect. 3 1
965 44.87 temperature 10.0 270 > th dose dependent rect. 10 23
975 44.88 temperature 15.0 720 > th dose independent rect. 5 16
979 44.88 temperature 30.0 720 < th dose dependent sin 9 NA
980 44.88 humidity 80.0 90 > th dose dependent rect. 22 1
982 44.88 temperature 10.0 720 > th dose dependent rect. 3 6