Os02g0473200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os02g0473200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.21 | 0.267 | 10.4 | 0.0433 | 1.87 | -0.728 | 0.849 | 2.2 | -0.297 | 6.52 | 19.93 | 3932 | -- | -- |
| 35.47 | 0.277 | 10.5 | -0.202 | 1.86 | -0.832 | 0.762 | -- | -0.318 | 6.61 | 14.89 | 21724 | -- | -- |
| 33.99 | 0.272 | 10.4 | 0.0543 | 1.88 | -0.731 | -- | 2.19 | -0.298 | 6.53 | 19.9 | 3992 | -- | -- |
| 37 | 0.283 | 10.5 | -0.0765 | 1.88 | -0.931 | -- | -- | -0.252 | 6.61 | 13.97 | 21758 | -- | -- |
| 200.41 | 0.663 | 10.5 | -0.586 | -- | -1.16 | -- | 0.268 | -0.414 | -- | 23.43 | 4976 | -- | -- |
| 47.23 | 0.322 | 10.5 | -0.866 | 1.88 | -- | 0.844 | -- | -0.606 | 6.64 | -- | -- | -- | -- |
| 49.03 | 0.328 | 10.5 | -0.852 | 1.88 | -- | -- | -- | -0.609 | 6.65 | -- | -- | -- | -- |
| 198.69 | 0.659 | 10.6 | -0.641 | -- | -1.17 | -- | -- | -0.452 | -- | 24.27 | 2015 | -- | -- |
| 37.01 | 0.283 | 10.5 | -- | 1.89 | -0.981 | -- | -- | -0.243 | 6.61 | 11.11 | 21740 | -- | -- |
| 233 | 0.713 | 10.6 | -0.808 | -- | -- | -- | -- | -0.571 | -- | -- | -- | -- | -- |
| 68.18 | 0.386 | 10.5 | -- | 1.87 | -- | -- | -- | -0.514 | 6.67 | -- | -- | -- | -- |
| 130.17 | 0.531 | 10.5 | -- | -- | -2.01 | -- | -- | -0.323 | -- | 24.29 | 457 | -- | -- |
| 250.22 | 0.738 | 10.6 | -- | -- | -- | -- | -- | -0.481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.36 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 7 | 30.45 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 16 | 30.51 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 22 | 30.55 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 24 | 30.56 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 44 | 30.80 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 52 | 30.85 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 107 | 31.22 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 158 | 31.49 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 167 | 31.53 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 182 | 31.57 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 192 | 31.65 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 194 | 31.65 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 196 | 31.66 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 206 | 31.67 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 245 | 31.79 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 252 | 31.81 | temperature | 20.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 258 | 31.84 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 289 | 31.94 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 2 | 11 |
| 291 | 31.94 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 292 | 31.94 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 313 | 31.97 | temperature | 20.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 314 | 31.97 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 329 | 31.99 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 347 | 32.00 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 17 |
| 359 | 32.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 372 | 32.03 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 399 | 32.06 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 405 | 32.06 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 413 | 32.07 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 462 | 32.12 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 493 | 32.15 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 531 | 32.18 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 557 | 32.20 | radiation | 20.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 562 | 32.20 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 2 | 11 |
| 584 | 32.21 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 588 | 32.21 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 628 | 32.25 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 668 | 32.26 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 676 | 32.27 | temperature | 25.0 | 4320 | > th | dose independent | sin | 4 | NA |
| 746 | 32.32 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 785 | 32.34 | radiation | 30.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 788 | 32.34 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 801 | 32.34 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 803 | 32.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 805 | 32.34 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 810 | 32.35 | radiation | 30.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 813 | 32.35 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 849 | 32.36 | radiation | 30.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 869 | 32.37 | radiation | 30.0 | 43200 | < th | dose independent | sin | 0 | NA |
| 871 | 32.37 | radiation | 30.0 | 43200 | < th | dose independent | no | NA | NA |
| 877 | 32.37 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 979 | 32.38 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 2 |