Os04g0331600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os04g0331600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.63 | 0.228 | 2.9 | 0.0613 | 0.0767 | 0.258 | 0.0177 | 0.654 | -0.00837 | 6.32 | 1015 | 3922 | -- | -- |
| 24.61 | 0.231 | 2.9 | 0.13 | 0.0737 | 0.248 | -0.00779 | -- | 0.0182 | 6.15 | 1014 | 3988 | -- | -- |
| 23.64 | 0.226 | 2.9 | 0.0617 | 0.0768 | 0.258 | -- | 0.653 | -0.00841 | 6.31 | 1015 | 3921 | -- | -- |
| 24.61 | 0.231 | 2.9 | 0.129 | 0.0753 | 0.239 | -- | -- | 0.00975 | 6.24 | 1014 | 3989 | -- | -- |
| 23.94 | 0.228 | 2.9 | 0.0666 | -- | 0.259 | -- | 0.647 | -0.00743 | -- | 1015 | 3921 | -- | -- |
| 26.15 | 0.24 | 2.9 | 0.134 | 0.0655 | -- | -0.054 | -- | -0.0184 | 6.4 | -- | -- | -- | -- |
| 26.15 | 0.239 | 2.9 | 0.133 | 0.0652 | -- | -- | -- | -0.0182 | 6.49 | -- | -- | -- | -- |
| 24.89 | 0.232 | 2.9 | 0.131 | -- | 0.234 | -- | -- | 0.00942 | -- | 1014 | 3994 | -- | -- |
| 25.04 | 0.233 | 2.9 | -- | 0.0775 | 0.244 | -- | -- | -0.000362 | 6.11 | 1014 | 3997 | -- | -- |
| 26.37 | 0.24 | 2.9 | 0.135 | -- | -- | -- | -- | -0.0169 | -- | -- | -- | -- | -- |
| 26.62 | 0.241 | 2.91 | -- | 0.067 | -- | -- | -- | -0.033 | 6.37 | -- | -- | -- | -- |
| 25.34 | 0.234 | 2.9 | -- | -- | 0.236 | -- | -- | -0.00503 | -- | 1014 | 3994 | -- | -- |
| 26.85 | 0.242 | 2.91 | -- | -- | -- | -- | -- | -0.0318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.77 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 2 | 3 |
| 2 | 19.77 | atmosphere | 1e+03 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 5 | 19.79 | atmosphere | 1e+03 | 90 | < th | dose independent | rect. | 2 | 1 |
| 8 | 19.79 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 34 | 21.50 | humidity | 5e+01 | 90 | < th | dose independent | rect. | 12 | 1 |
| 37 | 21.50 | humidity | 5e+01 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 135 | 21.55 | humidity | 5e+01 | 90 | < th | dose independent | rect. | 10 | 4 |
| 347 | 21.82 | wind | 1e+00 | 90 | < th | dose dependent | rect. | 3 | 1 |
| 398 | 22.03 | wind | 1e+00 | 90 | < th | dose independent | rect. | 2 | 2 |
| 400 | 22.07 | humidity | 5e+01 | 30 | < th | dose dependent | sin | 7 | NA |
| 428 | 22.25 | humidity | 5e+01 | 10 | < th | dose dependent | sin | 12 | NA |
| 429 | 22.28 | humidity | 5e+01 | 10 | < th | dose independent | sin | 13 | NA |
| 451 | 22.60 | humidity | 5e+01 | 10 | > th | dose independent | sin | 13 | NA |
| 520 | 22.96 | precipitation | 1e-01 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 521 | 22.96 | precipitation | 1e-01 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 529 | 23.01 | precipitation | 1e-01 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 542 | 23.05 | precipitation | 1e-01 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 584 | 23.23 | wind | 5e+00 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 618 | 23.33 | radiation | 1e+00 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 641 | 23.34 | radiation | 1e+00 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 648 | 23.35 | wind | 5e+00 | 720 | > th | dose independent | rect. | 2 | 1 |
| 651 | 23.35 | wind | 7e+00 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 799 | 23.59 | humidity | 5e+01 | 90 | < th | dose independent | sin | 7 | NA |
| 807 | 23.60 | radiation | 4e+01 | 90 | > th | dose independent | rect. | 12 | 2 |
| 870 | 23.69 | radiation | 4e+01 | 90 | > th | dose independent | rect. | 12 | 21 |
| 873 | 23.70 | precipitation | 1e-01 | 90 | > th | dose independent | rect. | 21 | 1 |
| 895 | 23.70 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 898 | 23.71 | wind | 7e+00 | 90 | > th | dose independent | rect. | 20 | 1 |
| 901 | 23.71 | wind | 7e+00 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 928 | 23.71 | wind | 7e+00 | 90 | > th | dose dependent | rect. | 20 | 1 |
| 975 | 23.76 | radiation | 1e+01 | 1440 | < th | dose dependent | rect. | 14 | 1 |