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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0337000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.0281) R2 : 0.104
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.431 (0.0592) R2dN8 : 0.134 R2N8 : 0.104
σ : 0.53
deviance : 128.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
113.18 0.5 3.55 -0.211 0.443 0.32 -0.104 1.21 0.431 3.3 70.04 5157 -- --
114.36 0.498 3.53 -0.157 0.412 0.452 -0.143 -- 0.549 3.42 74 5068 -- --
113.21 0.496 3.55 -0.209 0.443 0.319 -- 1.22 0.431 3.34 70.04 5159 -- --
114.3 0.498 3.53 -0.145 0.43 0.484 -- -- 0.562 3.08 74.05 5099 -- --
119.54 0.512 3.57 -0.094 -- 0.312 -- -0.262 0.401 -- 70.04 5159 -- --
117.51 0.508 3.56 -0.136 0.445 -- -0.0919 -- 0.406 3.65 -- -- -- --
117.53 0.508 3.56 -0.135 0.445 -- -- -- 0.406 3.7 -- -- -- --
119.86 0.512 3.56 -0.0918 -- 0.285 -- -- 0.427 -- 74.24 6197 -- --
114.89 0.499 3.53 -- 0.424 0.473 -- -- 0.58 3.13 74.25 5099 -- --
128.48 0.53 3.56 -0.116 -- -- -- -- 0.418 -- -- -- -- --
118.01 0.508 3.56 -- 0.442 -- -- -- 0.421 3.7 -- -- -- --
120.08 0.512 3.56 -- -- 0.287 -- -- 0.437 -- 74.24 6197 -- --
128.83 0.53 3.56 -- -- -- -- -- 0.431 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.69 temperature 10.0 30 > th dose dependent rect. 7 23
6 110.44 temperature 10.0 90 > th dose dependent rect. 7 15
8 110.55 temperature 20.0 90 > th dose dependent rect. 5 2
10 110.63 temperature 15.0 10 > th dose independent rect. 7 23
11 110.64 wind 1.0 4320 < th dose dependent rect. 18 1
13 110.67 wind 1.0 30 > th dose independent rect. 22 9
18 110.79 radiation 1.0 90 > th dose independent rect. 5 2
34 110.88 atmosphere 1010.0 10 < th dose independent rect. 1 10
37 110.93 temperature 10.0 10 > th dose dependent rect. 8 14
39 111.03 wind 1.0 4320 < th dose independent rect. 18 1
41 111.06 temperature 25.0 10 > th dose independent rect. 5 2
42 111.06 temperature 20.0 90 > th dose independent rect. 5 2
46 111.14 atmosphere 995.0 90 > th dose dependent rect. 22 9
61 111.28 wind 1.0 4320 > th dose independent rect. 18 1
64 111.30 temperature 25.0 30 > th dose independent rect. 21 10
72 111.42 humidity 80.0 10 > th dose independent rect. 5 20
74 111.43 atmosphere 995.0 10 > th dose dependent rect. 22 10
78 111.45 radiation 10.0 10 < th dose independent rect. 5 20
111 111.65 wind 7.0 720 < th dose independent rect. 19 12
114 111.66 atmosphere 1005.0 90 > th dose independent rect. 5 2
115 111.66 wind 1.0 720 > th dose independent rect. 9 10
117 111.67 temperature 15.0 720 > th dose independent rect. 7 12
121 111.72 temperature 10.0 720 > th dose dependent rect. 7 4
122 111.73 radiation 1.0 30 > th dose dependent rect. 5 2
134 111.74 precipitation 0.1 720 < th dose independent rect. 7 12
135 111.74 precipitation 0.1 720 < th dose dependent rect. 7 12
137 111.76 atmosphere 1005.0 90 > th dose independent rect. 22 9
138 111.76 atmosphere 1005.0 10 > th dose independent rect. 22 10
144 111.78 humidity 80.0 720 > th dose independent rect. 5 4
153 111.85 humidity 80.0 720 > th dose independent rect. 4 9
154 111.85 atmosphere 995.0 10 > th dose independent rect. 7 23
156 111.86 wind 3.0 90 < th dose independent rect. 5 2
157 111.87 atmosphere 1000.0 90 > th dose independent rect. 7 15
159 111.88 atmosphere 1010.0 90 < th dose independent rect. 7 22
163 111.90 wind 1.0 720 > th dose independent rect. 7 12
164 111.90 wind 9.0 10 < th dose independent rect. 7 23
166 111.91 precipitation 0.1 90 < th dose independent rect. 7 22
168 111.91 temperature 30.0 90 < th dose dependent rect. 11 13
169 111.91 precipitation 0.1 90 < th dose dependent rect. 7 22
174 111.92 atmosphere 1015.0 30 < th dose dependent rect. 1 10
175 111.93 wind 3.0 10 < th dose independent rect. 6 1
177 111.94 atmosphere 1010.0 10 < th dose independent rect. 1 12
179 111.94 wind 5.0 10 < th dose dependent rect. 6 1
181 111.94 temperature 30.0 10 < th dose dependent rect. 11 14
183 111.95 wind 1.0 10 > th dose independent rect. 6 1
187 111.96 wind 9.0 1440 < th dose independent rect. 23 9
194 111.97 humidity 80.0 10 > th dose independent rect. 6 1
195 111.97 humidity 90.0 10 < th dose independent rect. 6 1
199 111.97 humidity 60.0 30 > th dose dependent rect. 6 1
205 111.98 humidity 80.0 720 < th dose independent rect. 3 10
207 111.98 atmosphere 995.0 30 > th dose dependent rect. 6 1
215 111.99 temperature 10.0 10 > th dose independent rect. 6 1
217 111.99 temperature 30.0 10 < th dose independent rect. 6 1
218 111.99 humidity 50.0 10 > th dose independent rect. 6 1
223 111.99 atmosphere 995.0 10 > th dose independent rect. 6 1
224 111.99 atmosphere 1015.0 10 < th dose independent rect. 6 1
225 111.99 radiation 20.0 10 < th dose independent rect. 6 1
228 111.99 precipitation 0.1 10 < th dose independent rect. 6 1
236 111.99 precipitation 0.1 10 < th dose dependent rect. 6 1
255 112.00 humidity 80.0 720 < th dose independent rect. 5 8
271 112.01 radiation 40.0 10 < th dose dependent rect. 6 1
272 112.02 wind 9.0 1440 < th dose independent rect. 7 1
273 112.02 temperature 10.0 1440 > th dose independent rect. 7 1
277 112.02 temperature 30.0 1440 < th dose independent rect. 7 1
281 112.02 humidity 50.0 1440 > th dose independent rect. 7 1
287 112.02 atmosphere 995.0 1440 > th dose independent rect. 7 1
288 112.02 atmosphere 1015.0 1440 < th dose independent rect. 7 1
290 112.02 temperature 10.0 1440 > th dose independent rect. 8 23
318 112.06 temperature 25.0 10 > th dose dependent rect. 21 10
322 112.07 temperature 30.0 30 < th dose dependent rect. 6 1
349 112.11 humidity 90.0 4320 > th dose independent rect. 9 1
365 112.15 wind 5.0 90 < th dose independent rect. 22 9
384 112.18 atmosphere 1010.0 10 < th dose independent rect. 1 14
399 112.21 atmosphere 1015.0 10 < th dose dependent rect. 6 1
421 112.23 temperature 30.0 10 < th dose dependent rect. 3 22
451 112.28 humidity 90.0 10 < th dose dependent rect. 6 1
459 112.30 temperature 25.0 270 > th dose independent rect. 7 13
460 112.30 wind 7.0 90 < th dose independent rect. 7 15
465 112.32 wind 5.0 10 < th dose independent rect. 22 10
467 112.32 wind 1.0 10 > th dose independent rect. 11 21
471 112.33 humidity 80.0 720 > th dose independent rect. 5 2
473 112.33 atmosphere 1015.0 90 < th dose independent rect. 22 9
486 112.36 precipitation 0.1 90 < th dose independent rect. 7 15
487 112.36 atmosphere 1010.0 10 < th dose independent rect. 1 21
489 112.36 precipitation 0.1 90 < th dose dependent rect. 7 15
498 112.38 temperature 15.0 90 > th dose independent rect. 17 12
499 112.38 humidity 50.0 10 > th dose independent rect. 7 23
520 112.42 temperature 15.0 720 > th dose independent rect. 17 2
525 112.43 radiation 1.0 720 > th dose independent rect. 7 6
526 112.43 atmosphere 1000.0 10 > th dose independent rect. 8 14
530 112.44 temperature 30.0 90 < th dose independent rect. 5 13
544 112.47 radiation 1.0 30 < th dose independent rect. 1 11
547 112.47 precipitation 0.1 720 < th dose independent rect. 1 18
551 112.47 precipitation 0.1 720 < th dose dependent rect. 1 18
552 112.47 temperature 30.0 10 < th dose dependent rect. 5 20
553 112.48 humidity 90.0 4320 < th dose independent rect. 9 1
555 112.48 temperature 25.0 270 < th dose independent rect. 9 12
558 112.49 temperature 15.0 90 > th dose independent rect. 7 15
560 112.50 humidity 70.0 1440 > th dose independent rect. 10 1
562 112.50 radiation 1.0 30 < th dose independent rect. 1 7
568 112.51 wind 1.0 4320 < th dose independent rect. 13 1
582 112.52 humidity 70.0 30 > th dose dependent rect. 5 20
588 112.55 humidity 70.0 1440 > th dose independent rect. 9 3
589 112.55 precipitation 0.1 90 < th dose independent rect. 22 9
591 112.55 radiation 30.0 720 < th dose independent rect. 19 12
594 112.55 humidity 50.0 4320 < th dose dependent rect. 14 1
597 112.55 precipitation 0.1 90 < th dose dependent rect. 22 9
603 112.56 temperature 10.0 720 > th dose independent rect. 19 12
604 112.56 temperature 30.0 720 < th dose independent rect. 19 12
605 112.56 humidity 50.0 720 > th dose independent rect. 19 12
606 112.56 atmosphere 995.0 720 > th dose independent rect. 19 12
607 112.56 atmosphere 1015.0 720 < th dose independent rect. 7 12
616 112.57 atmosphere 1000.0 270 > th dose independent rect. 2 23
617 112.57 radiation 1.0 30 < th dose dependent rect. 1 11
629 112.58 humidity 50.0 720 > th dose independent rect. 17 9
630 112.58 humidity 70.0 90 > th dose independent rect. 22 9
632 112.58 humidity 90.0 4320 > th dose dependent rect. 9 1
639 112.59 temperature 10.0 90 > th dose independent rect. 22 9
640 112.59 temperature 30.0 90 < th dose independent rect. 22 9
641 112.59 humidity 50.0 90 > th dose independent rect. 22 9
643 112.59 atmosphere 995.0 90 > th dose independent rect. 22 9
644 112.59 radiation 30.0 90 < th dose independent rect. 22 9
648 112.59 precipitation 0.1 90 < th dose independent rect. 17 12
651 112.59 atmosphere 1015.0 90 < th dose independent rect. 7 15
652 112.59 radiation 1.0 30 > th dose independent rect. 16 15
655 112.59 precipitation 0.1 90 < th dose dependent rect. 17 12
660 112.60 wind 1.0 4320 < th dose dependent rect. 13 1
662 112.60 radiation 1.0 30 < th dose dependent rect. 1 7
669 112.61 humidity 90.0 30 < th dose independent rect. 22 9
672 112.62 humidity 70.0 1440 < th dose independent rect. 10 1
690 112.65 humidity 50.0 4320 < th dose independent rect. 14 1
706 112.66 humidity 50.0 720 > th dose independent rect. 7 8
721 112.69 temperature 25.0 10 < th dose independent rect. 1 9
730 112.70 temperature 30.0 10 < th dose independent rect. 11 14
731 112.70 wind 1.0 30 > th dose dependent rect. 6 1
750 112.72 humidity 80.0 14400 > th dose dependent rect. 1 4
763 112.74 wind 1.0 720 > th dose independent rect. 19 6
773 112.75 atmosphere 1015.0 10 < th dose independent rect. 22 10
782 112.75 temperature 10.0 30 > th dose dependent rect. 1 21
783 112.76 radiation 10.0 720 < th dose independent rect. 17 2
786 112.76 humidity 70.0 10 > th dose independent rect. 22 10
789 112.76 humidity 70.0 90 > th dose independent rect. 5 12
790 112.76 wind 1.0 30 > th dose independent rect. 11 14
792 112.76 humidity 50.0 720 > th dose independent rect. 1 18
804 112.77 humidity 50.0 10 > th dose dependent rect. 13 12
806 112.77 radiation 1.0 90 < th dose dependent rect. 18 16
810 112.78 humidity 70.0 720 > th dose independent rect. 17 9
811 112.78 atmosphere 1010.0 10 < th dose independent rect. 8 14
818 112.78 radiation 1.0 90 < th dose dependent rect. 18 18
820 112.79 wind 7.0 720 < th dose independent rect. 19 6
821 112.79 humidity 50.0 720 > th dose independent rect. 7 6
827 112.79 radiation 40.0 10 < th dose independent rect. 22 10
832 112.79 humidity 50.0 720 > th dose dependent rect. 5 2
834 112.79 radiation 1.0 90 < th dose dependent rect. 18 13
848 112.81 humidity 50.0 720 > th dose independent rect. 17 2
860 112.82 wind 9.0 10 < th dose independent rect. 8 14
862 112.82 wind 1.0 90 > th dose independent rect. 7 15
880 112.84 wind 1.0 4320 > th dose independent rect. 13 1
919 112.86 radiation 1.0 4320 < th dose dependent rect. 7 1
932 112.87 humidity 50.0 720 > th dose independent rect. 7 12
934 112.87 humidity 50.0 10 > th dose independent rect. 8 14
947 112.88 atmosphere 1000.0 90 > th dose dependent rect. 15 16
952 112.89 precipitation 0.1 10 < th dose independent rect. 22 10
958 112.89 precipitation 0.1 10 < th dose dependent rect. 22 10
968 112.90 atmosphere 1010.0 90 < th dose independent rect. 18 11
976 112.90 radiation 20.0 10 < th dose dependent rect. 5 20
993 112.92 humidity 60.0 1440 > th dose independent rect. 19 10