BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0155500 Os05g0155500|AB024311
(534 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0155500 Importin alpha-1b subunit 998 0.0
AK100133 899 0.0
Os01g0253300 Importin alpha-1a subunit 833 0.0
Os01g0343200 Similar to Importin alpha-1b subunit 696 0.0
Os07g0688300 Similar to Importin alpha 1 437 e-122
Os01g0158000 Importin alpha-2 subunit 164 1e-40
Os05g0398100 Armadillo-like helical domain containing protein 68 1e-11
>Os05g0155500 Importin alpha-1b subunit
Length = 534
Score = 998 bits (2581), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/534 (91%), Positives = 491/534 (91%)
Query: 1 MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGXXXXXXXX 60
MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDG
Sbjct: 1 MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60
Query: 61 XXXXXXXXXXXXXQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120
QQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT
Sbjct: 61 AAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120
Query: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180
GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV
Sbjct: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180
Query: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240
REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ
Sbjct: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240
Query: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300
PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM
Sbjct: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300
Query: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI 360
HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI
Sbjct: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI 360
Query: 361 TAGNREXXXXXXXXXXXXPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCI 420
TAGNRE PLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCI
Sbjct: 361 TAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCI 420
Query: 421 KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQ 480
KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQ
Sbjct: 421 KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQ 480
Query: 481 SHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAXXXXXXXXXXPNVPSGGFNFG 534
SHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNA PNVPSGGFNFG
Sbjct: 481 SHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAQNGFNFGNQQPNVPSGGFNFG 534
>AK100133
Length = 504
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/461 (95%), Positives = 438/461 (95%)
Query: 74 QQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQRE 133
QQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQRE
Sbjct: 44 QQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQRE 103
Query: 134 DYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAG 193
DYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAG
Sbjct: 104 DYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAG 163
Query: 194 DSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSAL 253
DSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSAL
Sbjct: 164 DSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSAL 223
Query: 254 QRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALRT 313
QRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALRT
Sbjct: 224 QRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALRT 283
Query: 314 VGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREXXXXXXX 373
VGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNRE
Sbjct: 284 VGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVIN 343
Query: 374 XXXXXPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPR 433
PLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPR
Sbjct: 344 ANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPR 403
Query: 434 IVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVK 493
IVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVK
Sbjct: 404 IVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVK 463
Query: 494 MLESYWLEEEDDAMPSGDNAXXXXXXXXXXPNVPSGGFNFG 534
MLESYWLEEEDDAMP GDNA PNVPSGGFNFG
Sbjct: 464 MLESYWLEEEDDAMPPGDNAQNGFNFGNQQPNVPSGGFNFG 504
>Os01g0253300 Importin alpha-1a subunit
Length = 526
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/507 (79%), Positives = 441/507 (86%), Gaps = 6/507 (1%)
Query: 1 MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGXXXXXXXX 60
MSLRPSER EVRR+RYKVAVDA+EGRRRREDNMVEIRKSRREESLLKKRR+G
Sbjct: 1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60
Query: 61 XXXXXXXXXXXXXQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120
+KLE LPAM+ V SDD+ +QLEATTQFRKLLSIERSPPIEEVI +
Sbjct: 61 ASAATGV------DKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQS 114
Query: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180
GVVPRF+ FL RED+PQLQFEAAWALTNIASGTS+NTKVV++ GAVPIFVKLL S S+DV
Sbjct: 115 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDV 174
Query: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240
REQAVWALGNVAGDSPKCRDLVLA+G L PLL QLNEH KLSMLRNATWTLSNFCRGKPQ
Sbjct: 175 REQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 234
Query: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300
P+FEQ +PAL AL RLIHS DEEVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL+
Sbjct: 235 PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 294
Query: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI 360
HPS SVLIPALRTVGNIVTGDD QTQC+IDHQALPCLL+LLT N KKSIKKEACWTISNI
Sbjct: 295 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 354
Query: 361 TAGNREXXXXXXXXXXXXPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCI 420
TAGN++ PLV+LLQTAEFDIKKEAAWAISNATSGG+HDQIKYLV++GCI
Sbjct: 355 TAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCI 414
Query: 421 KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQ 480
KPLCDLL+CPD RIVTVCLEGLENILKVGE +K L AGDVN ++QMID+AEGLEKIENLQ
Sbjct: 415 KPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ 474
Query: 481 SHDNTEIYEKAVKMLESYWLEEEDDAM 507
SHDN EIYEKAVK+LE+YW++EEDD M
Sbjct: 475 SHDNNEIYEKAVKILEAYWMDEEDDTM 501
>Os01g0343200 Similar to Importin alpha-1b subunit
Length = 564
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/505 (67%), Positives = 401/505 (79%), Gaps = 4/505 (0%)
Query: 1 MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGXXXXXXXX 60
MSLRPSER +R+ YK ++DA EGRRRRED V +RK+ R+ +L +KRR
Sbjct: 1 MSLRPSERMGIRQKGYKASMDAAEGRRRREDITVILRKADRDRALKEKRR---RPTATAA 57
Query: 61 XXXXXXXXXXXXXQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120
++KLE LP MVQ + SDDS++QLE+TTQFRKLLS++ PPI+EVI +
Sbjct: 58 AEGLPQAAHSSAIEKKLESLPMMVQGLYSDDSSMQLESTTQFRKLLSVDHCPPIDEVIRS 117
Query: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180
GV+PRF+ FL RE+YPQLQFEAAWALTNIASGT+ NT V+E GAVPIFVKLLSSP EDV
Sbjct: 118 GVLPRFVEFLTREEYPQLQFEAAWALTNIASGTAANTMAVIEHGAVPIFVKLLSSPREDV 177
Query: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240
REQAVWALGNVAGDS KCR+LVL G + PLLQQLNEHAKLSMLRN+ WTLSNFCRGKPQ
Sbjct: 178 REQAVWALGNVAGDSTKCRNLVLMHGAMLPLLQQLNEHAKLSMLRNSAWTLSNFCRGKPQ 237
Query: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300
P+F+ V+PAL L+ LI SQDEE+LTD+CWALSYLSDG+ND IQAVIE+GV LVELL
Sbjct: 238 PDFKHVEPALPVLRELILSQDEEILTDSCWALSYLSDGSNDNIQAVIETGVCDWLVELLS 297
Query: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDH-QALPCLLNLLTNNHKKSIKKEACWTISN 359
HPS VLIPALRTVGNIVTGDD QTQC++ H QALPCL NLLT KKS+K+EACWTISN
Sbjct: 298 HPSPVVLIPALRTVGNIVTGDDAQTQCIVGHPQALPCLFNLLTTTQKKSVKREACWTISN 357
Query: 360 ITAGNREXXXXXXXXXXXXPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGC 419
ITAG +E PL+HLLQ AEFD+KKEA WAISNATSGGT +QI+YLV+QGC
Sbjct: 358 ITAGTKEQIQAVIDSNIIAPLLHLLQHAEFDVKKEAVWAISNATSGGTFNQIEYLVSQGC 417
Query: 420 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENL 479
IKPLCDLLV D + V CLE L+NIL+VGEA+KNLGA ++N + M+D+A+GL+KIE+L
Sbjct: 418 IKPLCDLLVHQDSKTVLTCLEALDNILRVGEAKKNLGACNMNIFVPMVDEADGLDKIEDL 477
Query: 480 QSHDNTEIYEKAVKMLESYWLEEED 504
Q+HDN EIY KAV +LESYW++E+D
Sbjct: 478 QNHDNVEIYNKAVYVLESYWVQEDD 502
>Os07g0688300 Similar to Importin alpha 1
Length = 462
Score = 437 bits (1123), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/433 (50%), Positives = 295/433 (68%), Gaps = 3/433 (0%)
Query: 77 LEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYP 136
LEGL MV+ V SDD+ QLEAT QFR+LLS E++P + ++I V+PRF FL R ++P
Sbjct: 1 LEGLSEMVEKVWSDDTTSQLEATIQFRRLLSDEKNPTVIKIIRADVLPRFSDFLSRHEHP 60
Query: 137 QLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSP 196
QLQ EAAW LTNIA+ SD T +V E GAVP V+LL S + ++R QA+WALGN+A D P
Sbjct: 61 QLQMEAAWVLTNIAA--SDYTLLVAECGAVPRLVELLESANANIRHQAIWALGNIAADVP 118
Query: 197 KCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSALQRL 256
CR++VL G + PLL Q E K+ +LR ATW LSN C GK P QVKP L + +L
Sbjct: 119 TCREIVLDHGAVTPLLAQFREGMKVPVLRTATWALSNLCFGK-LPAEVQVKPILDIISQL 177
Query: 257 IHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALRTVGN 316
IHS DE++L DACWAL Y+ DG +D IQ V+++G P+LV LLMH SA++L+P + +
Sbjct: 178 IHSVDEKILGDACWALCYICDGVSDGIQHVLDAGACPQLVNLLMHASANILLPVITVLAR 237
Query: 317 IVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREXXXXXXXXXX 376
I +GDD Q Q ++++ L L LL N+ KSIKK+AC +SNI+ G+++
Sbjct: 238 ISSGDDAQVQVLVENDILNYLAPLLARNYPKSIKKQACLIVSNISTGSKDNIQAVIDADV 297
Query: 377 XXPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVT 436
PL+ LL+T+E DIK+EAAWAISNA SGG++DQI+YLV++GC++PLC++L D +V
Sbjct: 298 ISPLIFLLKTSEKDIKEEAAWAISNAASGGSNDQIQYLVSRGCLEPLCNVLTYQDADLVY 357
Query: 437 VCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLE 496
CLEGL+NIL+ G K VN YAQ I + GL+K+E+LQ DN IY+ +K+LE
Sbjct: 358 ACLEGLQNILQAGAVGKQGQGSTVNPYAQFILECGGLDKLEDLQEVDNDAIYKLVMKLLE 417
Query: 497 SYWLEEEDDAMPS 509
YW EE D P+
Sbjct: 418 GYWDEEVSDDDPN 430
>Os01g0158000 Importin alpha-2 subunit
Length = 528
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 210/430 (48%), Gaps = 37/430 (8%)
Query: 95 QLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTS 154
++EA R+LLS P ++ I G VP + +L + EAAW LTNIA+G
Sbjct: 109 KIEALRDLRRLLSQPEVPLVDTAIKAGAVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEP 168
Query: 155 DNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQ 214
+ TK ++ + + L S V EQ WA+GNVAG+ + R +LA G L P L +
Sbjct: 169 EETKSLLPA-LPLLIAHLGEKSSTLVAEQCAWAIGNVAGEGAELRSTLLAQGALRP-LTR 226
Query: 215 LNEHAKLSMLRNATWTLSNFCRGKPQPN----FEQVKPALSALQRLIHSQDEEVLTDACW 270
L +K S R A W +SN +G P P + L+A+ + +DEE+ T+ W
Sbjct: 227 LMFSSKGSTARTAAWAMSNLIKG-PDPKAANELITIDGVLNAIIASLEKEDEELATEVAW 285
Query: 271 ALSYLSDGTNDKIQAVIESGVFPRLV--ELLMHPSASVLIPALRTVGNIVTGDDMQTQCV 328
+ YLS ++ I ++ S V P+L+ L + +LIP LR +GN++ DD V
Sbjct: 286 VVVYLSALSDRGISLIVRSSV-PQLLIGRLFSSENLQLLIPVLRGLGNLIAADDYMVDSV 344
Query: 329 ------IDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREXXXXXXXXXXXXPLVH 382
I QAL L+ L +++ + ++KE+ W +SNI AG+ E L+
Sbjct: 345 LTVGHNIIDQALSGLIKCLKSDN-RVLRKESSWALSNIAAGSFEHKKLIFASEATPVLIR 403
Query: 383 LLQTAEFDIKKEAAWAISNATSGGTHD------QIKYLVA---QGCIKPLCDLLVCPDPR 433
L+ + +FDI++EAA+ + N T + +++LVA G + L+ D
Sbjct: 404 LVTSMQFDIRREAAYTLGNLCVVPTGNCELPKIIVEHLVAIVDGGALPGFIHLVRSADVD 463
Query: 434 IVTVCLEGLENILKVGEAEKNLGAGDVNSYA-QMIDDAEGLEKIENLQSHDNTEIYEKAV 492
+ L+ LE +++ G N ++++ +G+E +E Q H+N ++ A
Sbjct: 464 TAGLGLQFLELVMR----------GYPNKQGPKLVEMEDGIEAMERFQFHENEQMRNMAN 513
Query: 493 KMLESYWLEE 502
+++ Y+ E+
Sbjct: 514 GLVDEYFGED 523
>Os05g0398100 Armadillo-like helical domain containing protein
Length = 752
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 142/318 (44%), Gaps = 35/318 (11%)
Query: 142 AAWALTNIASGTSDNTKVV---VESGAVPIFVKLLSSP---------------SEDVREQ 183
AA T++ + + N +VV VE GAVP V L P +V +
Sbjct: 105 AAKRATHVLAELAKNEEVVNVIVEGGAVPALVCHLKEPPAVAVLQEEQQPRPFEHEVEKG 164
Query: 184 AVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEH-------AKLSMLRNATWTLSNFCR 236
A +ALG +A P+ + L++ +G L L+ L H A S++R A ++N
Sbjct: 165 AAFALGLLAV-KPEHQQLIVDAGALPLLVNLLKRHKNATNLRAVNSVIRRAADAITNLAH 223
Query: 237 GKPQ-PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRL 295
+++ + L L+ SQD +V A AL L+ ++ +++ P L
Sbjct: 224 ENSNIKTCVRIEGGIPPLVELLESQDLKVQRAAAGALRTLAFKNDENKSQIVDCNALPTL 283
Query: 296 VELLMHPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACW 355
+ +L A++ A+ +GN+V + V++ AL ++ LL++ +S ++EA
Sbjct: 284 ILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLNAGALQPVIGLLSSCCTES-QREAAL 342
Query: 356 TISNITAGNREXXXXXXXXXXXXPLVHLLQTAEFDIKKEAAWAI------SNATSGGTHD 409
+ + + + PL+ +LQ+A+ +++ +A+A+ S+ S TH+
Sbjct: 343 LLGQFASADSDCKVHIVQRGAVRPLIEMLQSADVQLREMSAFALGRLAQRSSFVSQDTHN 402
Query: 410 QIKYLVAQGCIKPLCDLL 427
Q + G + PL LL
Sbjct: 403 QAG-IAYNGGLVPLLKLL 419
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,851,679
Number of extensions: 655301
Number of successful extensions: 1845
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1726
Number of HSP's successfully gapped: 7
Length of query: 534
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 428
Effective length of database: 11,501,117
Effective search space: 4922478076
Effective search space used: 4922478076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)