Os07g0688300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Importin alpha 1.
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Os07g0688300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Importin alpha 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.02 | 0.326 | 7.11 | 0.482 | 0.247 | 0.849 | -0.0159 | -0.258 | 0.497 | 9.02 | 49.99 | 46 | -- | -- |
| 48.04 | 0.323 | 7.11 | 0.475 | 0.237 | 0.931 | 0.107 | -- | 0.488 | 8.8 | 70 | 47 | -- | -- |
| 48.02 | 0.323 | 7.11 | 0.482 | 0.246 | 0.849 | -- | -0.257 | 0.497 | 9.01 | 50 | 46 | -- | -- |
| 48.08 | 0.323 | 7.11 | 0.478 | 0.236 | 0.925 | -- | -- | 0.489 | 8.81 | 70 | 47 | -- | -- |
| 50.28 | 0.33 | 7.11 | 0.478 | -- | 0.744 | -- | -0.28 | 0.501 | -- | 70 | 84 | -- | -- |
| 58.05 | 0.357 | 7.12 | 0.478 | 0.426 | -- | -0.0336 | -- | 0.462 | 2.14 | -- | -- | -- | -- |
| 58.06 | 0.357 | 7.12 | 0.479 | 0.426 | -- | -- | -- | 0.462 | 2.14 | -- | -- | -- | -- |
| 50.42 | 0.331 | 7.11 | 0.49 | -- | 0.739 | -- | -- | 0.502 | -- | 89.5 | 148 | -- | -- |
| 54.1 | 0.343 | 7.12 | -- | 0.238 | 0.927 | -- | -- | 0.436 | 8.68 | 82.56 | 47 | -- | -- |
| 68.92 | 0.388 | 7.12 | 0.496 | -- | -- | -- | -- | 0.473 | -- | -- | -- | -- | -- |
| 64.09 | 0.374 | 7.14 | -- | 0.435 | -- | -- | -- | 0.409 | 2.17 | -- | -- | -- | -- |
| 56.5 | 0.35 | 7.13 | -- | -- | 0.778 | -- | -- | 0.434 | -- | 102 | 49 | -- | -- |
| 75.43 | 0.405 | 7.13 | -- | -- | -- | -- | -- | 0.418 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.89 | radiation | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 16 | 48.47 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 17 | 48.48 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 15 |
| 20 | 48.56 | radiation | 10 | 90 | > th | dose independent | sin | 23 | NA |
| 27 | 48.63 | radiation | 1 | 30 | > th | dose dependent | rect. | 8 | 11 |
| 38 | 48.64 | radiation | 1 | 30 | > th | dose dependent | sin | 21 | NA |
| 86 | 48.80 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 8 |
| 88 | 48.80 | radiation | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 104 | 48.83 | radiation | 40 | 30 | < th | dose dependent | no | NA | NA |
| 158 | 48.90 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 217 | 48.90 | radiation | 40 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 275 | 48.92 | radiation | 1 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 348 | 49.05 | radiation | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 361 | 49.08 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 22 |
| 377 | 49.15 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 393 | 49.21 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 430 | 49.32 | radiation | 20 | 90 | < th | dose independent | sin | 22 | NA |
| 432 | 49.33 | radiation | 20 | 270 | < th | dose dependent | rect. | 10 | 8 |
| 433 | 49.33 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 436 | 49.34 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 462 | 49.36 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 23 |
| 485 | 49.40 | radiation | 40 | 30 | < th | dose dependent | rect. | 5 | 17 |
| 567 | 49.55 | radiation | 20 | 30 | < th | dose independent | rect. | 5 | 17 |
| 630 | 49.62 | radiation | 40 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 798 | 49.73 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 14 |
| 830 | 49.73 | radiation | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 959 | 49.82 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |