BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0149100 Os05g0149100|AK107944
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0149100 C2 calcium/lipid-binding region, CaLB domain c... 313 6e-86
Os01g0369500 C2 calcium/lipid-binding region, CaLB domain c... 157 9e-39
Os01g0934100 C2 calcium/lipid-binding region, CaLB domain c... 135 4e-32
Os07g0670200 C2 calcium/lipid-binding region, CaLB domain c... 112 3e-25
Os07g0670300 C2 calcium/lipid-binding region, CaLB domain c... 110 9e-25
Os05g0370300 C2 calcium/lipid-binding region, CaLB domain c... 100 1e-21
>Os05g0149100 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 279
Score = 313 bits (803), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 160/191 (83%), Positives = 160/191 (83%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTHADREGGRSPMWHAP 60
MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTHADREGGRSPMWHAP
Sbjct: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTHADREGGRSPMWHAP 60
Query: 61 LRFPIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLVAAAPEGGEHRHLSYHVR 120
LRFPIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLVAAAPEGGEHRHLSYHVR
Sbjct: 61 LRFPIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLVAAAPEGGEHRHLSYHVR 120
Query: 121 RPVSGRKCGVLHISYQITDXXXXXXXXXXXXXXXXTRHVSGKGLQLSAITAYPXXXXXXX 180
RPVSGRKCGVLHISYQITD TRHVSGKGLQLSAITAYP
Sbjct: 121 RPVSGRKCGVLHISYQITDEAAEPASAAGARGASSTRHVSGKGLQLSAITAYPSAGRHSG 180
Query: 181 XXXXXXXXPTL 191
PTL
Sbjct: 181 GRRGAAQSPTL 191
>Os01g0369500 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 297
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 101/140 (72%), Gaps = 2/140 (1%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTHADREGGRSPMWHAP 60
MA R+LE+TLVSA +LKKVT+FS+M VYAVASISG + +P H THADR GG +P W+
Sbjct: 1 MAYRLLELTLVSASDLKKVTLFSRMHVYAVASISGSNVPMPMHGTHADRNGGSNPAWNTV 60
Query: 61 LRFPIPDAGADMRAIALHVLLRAERVFGDS-DVGEVFVPVKDLVAAAPEGGEHRHLSYHV 119
L FP+P A D R +ALHV LRA R FG DVG+VFVP+ DL+A A +GGE R SY V
Sbjct: 61 LHFPVP-ARFDTRGLALHVQLRARRSFGGHRDVGDVFVPLDDLLAGAHDGGEPRPASYQV 119
Query: 120 RRPVSGRKCGVLHISYQITD 139
RRP+S R G L+ Y+ TD
Sbjct: 120 RRPMSARAHGTLYFCYRFTD 139
>Os01g0934100 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 358
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 97/141 (68%), Gaps = 8/141 (5%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTHADREGGRSPMWHA- 59
MA+R LE+TL+SAK+LK V + SKM VYAV S+SG R R DR GGR+P W+A
Sbjct: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGD--RRSRQRIATDRAGGRNPAWNAA 58
Query: 60 PLRFPIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLVAAAPEGG-EHRHLSYH 118
PLRF +P +GA +LHVLLRAER GD DVGEV +P+ +L++ AP+G + +SY
Sbjct: 59 PLRFTVPASGAG----SLHVLLRAERALGDRDVGEVHIPLSELLSGAPDGAVPAKFVSYQ 114
Query: 119 VRRPVSGRKCGVLHISYQITD 139
VR+ SG+ GVL+ SY+I +
Sbjct: 115 VRKISSGKPQGVLNFSYKIGE 135
>Os07g0670200 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 232
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 85/139 (61%), Gaps = 13/139 (9%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHR--THADREGGRSPMWH 58
MA R LEVTL+SA+NLKKV + + M VYAV S+SG P R T DR GGR+P W+
Sbjct: 1 MAYRALEVTLISARNLKKVNLITPMEVYAVVSVSGN----PLARQCTLPDRHGGRNPTWN 56
Query: 59 APLRFPIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLVAAAPEGGEHRHLSYH 118
A L +P A LHVLLR ER GD DVGEVFVPV DL AA +++L +
Sbjct: 57 ATLHLAVPAAAP---GAFLHVLLRTERALGDRDVGEVFVPVADLQLAA--AAHYQYLVHK 111
Query: 119 VRRPVSGRKCGVLHISYQI 137
V+ + CGVL +SY++
Sbjct: 112 VQS--TTEHCGVLSLSYRL 128
>Os07g0670300 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 310
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 87/139 (62%), Gaps = 5/139 (3%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTHADREGGRSPMWHAP 60
MA RVLEVTL SA++LK V S+M VYAVA+IS GDP + T D GGR P W+A
Sbjct: 1 MAYRVLEVTLHSARDLKNVNFISRMEVYAVATIS-GDP-LTRQCTPPDPYGGRHPAWNAT 58
Query: 61 LRFPIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLVAAAPEGGEH--RHLSYH 118
LRF +P A A LHVLLRAER GD D+GEV +P+ D+++ + G + SY
Sbjct: 59 LRFTVPPTAASA-AGCLHVLLRAERSLGDRDIGEVIIPLADVLSGPYDLGARPPQFASYQ 117
Query: 119 VRRPVSGRKCGVLHISYQI 137
VR+ GVLH+SY++
Sbjct: 118 VRKLHRSETRGVLHLSYRL 136
>Os05g0370300 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 303
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 91/144 (63%), Gaps = 11/144 (7%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTHADREGGRSPMWH-- 58
MA R LE+TL+SA +L+ V + SKM VYAV ++G DPR R DR GGR+P W
Sbjct: 86 MACRTLELTLLSASDLRGVNLVSKMEVYAVVYLAG-DPRA-RQRVATDRAGGRNPSWKGK 143
Query: 59 -APLRFPIPDAGADMRAIALHVLLRAER--VFGDSDVGEVFVPVKDLVAAAPEGGEHRHL 115
A +R +P +GA A+ VLLRAER + GD DVGEVFVP+ D++A + +G +
Sbjct: 144 DATVRLAVPASGAGSGAV--RVLLRAERAGLGGDRDVGEVFVPLPDVLAGSGDGPTAAAV 201
Query: 116 -SYHVRRPVSGRKC-GVLHISYQI 137
SY VR+ S R GVL++SY++
Sbjct: 202 ASYPVRKVGSSRTTHGVLNLSYKL 225
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,670,317
Number of extensions: 272112
Number of successful extensions: 568
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 6
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)