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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0370300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.03 (0.0332) R2 : 0.418
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.85 (0.226) R2dE : 0.388 R2E : 0.251
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.702 (0.0714) R2dN8 : 0.168 R2N8 : 0.0302
σ : 0.621
deviance : 177.84
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 9.198
memory length : 32
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 23

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.62 0.617 5.03 -0.325 0.0696 -3.79 0.981 0.304 -0.732 5.84 9.1 33 11 23
172.62 0.612 5.03 -0.325 0.0687 -3.82 0.986 -- -0.733 5.8 9.2 33 11 23
174.88 0.616 5.04 -0.329 0.085 -3.72 -- 0.747 -0.728 6.63 9.2 32 11 23
174.79 0.616 5.03 -0.266 0.0763 -3.8 -- -- -0.726 8.42 9.138 32 11 23
175.28 0.617 5.04 -0.319 -- -3.8 -- 0.354 -0.737 -- 9.186 33 11 23
278.26 0.782 4.97 -0.363 0.355 -- -0.359 -- -0.471 11.3 -- -- -- --
278.66 0.782 4.97 -0.379 0.363 -- -- -- -0.474 10.7 -- -- -- --
175.28 0.617 5.04 -0.312 -- -3.83 -- -- -0.735 -- 9.193 33 11 23
177.27 0.62 5.03 -- 0.0991 -3.81 -- -- -0.704 8.65 9.195 32 11 23
286.78 0.791 4.98 -0.386 -- -- -- -- -0.476 -- -- -- -- --
282.45 0.786 4.96 -- 0.365 -- -- -- -0.431 10.8 -- -- -- --
177.84 0.621 5.03 -- -- -3.85 -- -- -0.702 -- 9.198 32 11 23
290.72 0.796 4.97 -- -- -- -- -- -0.433 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.43 wind 9.0 30 < th dose independent rect. 11 23
2 174.61 humidity 50.0 30 > th dose dependent rect. 10 1
3 174.67 atmosphere 1005.0 10 > th dose dependent rect. 10 1
4 174.68 temperature 30.0 30 < th dose independent rect. 10 1
5 174.72 humidity 60.0 30 > th dose independent rect. 10 1
7 174.79 wind 5.0 30 < th dose independent rect. 10 1
10 174.84 atmosphere 1005.0 30 > th dose independent rect. 10 1
13 174.90 radiation 10.0 30 > th dose independent rect. 10 1
14 174.92 wind 1.0 30 > th dose independent rect. 10 1
15 174.92 temperature 10.0 30 > th dose independent rect. 10 1
18 174.92 humidity 90.0 30 < th dose independent rect. 10 1
19 174.92 atmosphere 995.0 30 > th dose independent rect. 10 1
20 174.92 atmosphere 1015.0 30 < th dose independent rect. 10 1
22 174.92 precipitation 0.1 30 < th dose independent rect. 10 1
23 174.92 temperature 10.0 30 > th dose independent rect. 11 23
24 174.92 precipitation 0.1 30 < th dose dependent rect. 10 1
25 174.98 wind 9.0 30 < th dose dependent rect. 10 1
27 175.02 radiation 40.0 30 < th dose independent rect. 10 1
30 175.08 temperature 10.0 30 > th dose dependent rect. 10 1
34 175.13 radiation 1.0 30 > th dose dependent rect. 10 1
44 175.38 humidity 90.0 30 < th dose dependent rect. 10 1
45 175.40 wind 1.0 30 < th dose independent rect. 10 1
46 175.40 temperature 10.0 1440 > th dose independent rect. 11 1
50 175.40 atmosphere 995.0 1440 > th dose independent rect. 11 1
53 175.40 precipitation 0.1 1440 < th dose independent rect. 11 1
54 175.40 temperature 10.0 1440 > th dose independent rect. 12 23
57 175.40 wind 1.0 30 < th dose dependent rect. 10 1
58 175.40 precipitation 0.1 1440 < th dose dependent rect. 11 1
60 175.47 atmosphere 1015.0 30 < th dose dependent rect. 10 1
62 175.61 radiation 40.0 30 < th dose dependent rect. 10 1
81 176.22 wind 1.0 30 > th dose dependent rect. 10 1
113 178.90 precipitation 0.1 30 < th dose independent rect. 11 23
114 178.90 precipitation 0.1 30 < th dose dependent rect. 11 23
126 183.81 atmosphere 995.0 30 > th dose independent rect. 11 23
128 186.83 radiation 1.0 1440 > th dose independent rect. 11 1
134 192.60 temperature 10.0 30 > th dose dependent rect. 11 23
138 201.29 humidity 50.0 30 > th dose independent rect. 11 23
140 201.98 temperature 30.0 30 < th dose dependent rect. 10 1
145 209.00 atmosphere 1015.0 30 < th dose independent rect. 11 23
147 209.15 humidity 90.0 1440 < th dose independent rect. 11 1
184 224.02 temperature 30.0 30 < th dose independent rect. 11 23
290 233.13 temperature 20.0 90 > th dose dependent rect. 1 8
314 234.76 radiation 20.0 90 > th dose independent rect. 16 19
320 235.54 radiation 20.0 90 > th dose independent rect. 6 5
339 236.12 radiation 40.0 90 > th dose independent rect. 15 20
366 236.98 temperature 25.0 90 > th dose dependent rect. 24 11
394 238.53 temperature 20.0 90 > th dose dependent rect. 20 13
405 239.40 wind 9.0 30 < th dose dependent rect. 11 23
411 239.68 temperature 20.0 270 > th dose dependent rect. 22 8
423 240.30 temperature 20.0 720 > th dose dependent rect. 21 2
424 240.32 temperature 15.0 10 > th dose dependent rect. 1 9
431 240.59 radiation 10.0 90 > th dose dependent rect. 16 19
497 242.55 humidity 70.0 30 < th dose independent rect. 16 19
500 242.69 radiation 40.0 720 < th dose independent rect. 15 8
509 243.25 temperature 25.0 720 > th dose independent rect. 20 2
569 244.50 temperature 10.0 720 > th dose independent rect. 15 8
570 244.50 temperature 10.0 720 > th dose independent rect. 23 16
578 244.82 temperature 25.0 720 > th dose independent rect. 17 10
602 245.29 atmosphere 995.0 720 > th dose independent rect. 23 16
604 245.33 temperature 25.0 720 < th dose independent rect. 17 10
606 245.34 humidity 90.0 90 < th dose dependent rect. 23 12
607 245.35 temperature 25.0 720 > th dose independent rect. 19 4
620 245.52 humidity 80.0 30 < th dose dependent rect. 21 14
648 245.72 humidity 80.0 30 < th dose dependent rect. 1 10
675 246.06 temperature 25.0 720 > th dose independent rect. 17 14
720 246.43 temperature 20.0 90 > th dose independent rect. 1 8
722 246.50 wind 1.0 90 > th dose independent rect. 11 22
726 246.53 temperature 25.0 720 < th dose independent sin 12 NA
733 246.60 temperature 25.0 30 > th dose dependent rect. 16 19
748 246.73 temperature 10.0 720 > th dose independent rect. 3 8
749 246.73 atmosphere 995.0 720 > th dose independent rect. 3 8
750 246.73 temperature 10.0 720 > th dose independent rect. 11 16
769 246.79 temperature 25.0 720 < th dose independent rect. 23 2
800 247.21 temperature 25.0 720 > th dose independent sin 13 NA
870 248.01 temperature 10.0 90 > th dose dependent rect. 11 12
917 248.35 precipitation 0.1 720 < th dose independent rect. 15 8
918 248.35 precipitation 0.1 720 < th dose dependent rect. 15 8
937 248.63 humidity 50.0 720 > th dose independent rect. 3 8
947 248.79 temperature 20.0 720 > th dose dependent rect. 19 8
958 248.91 temperature 20.0 720 > th dose dependent rect. 17 12
961 248.93 radiation 40.0 90 > th dose independent sin 11 NA
971 249.03 wind 9.0 720 < th dose independent rect. 3 8
988 249.24 temperature 20.0 10 > th dose independent rect. 2 8
997 249.38 temperature 30.0 720 < th dose dependent rect. 23 2