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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0369500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0588) R2 : 0.311
β1 : 1.06 (0.214) R2dD : 0.0408 R2D : -0.00609
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.75 (0.302) R2dE : 0.403 R2E : -0.113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -16.2 (1.33) R2dD*E : 0.375 R2D*E : -0.111
γ1 : -0.134 (0.127) R2dN8 : 0.00244 R2N8 : -0.00293
σ : 1.07
deviance : 523.36
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.687
memory length : 4326
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 4.97

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
496.45 1.05 3.58 1.07 0.475 -3.85 2.39 -16.7 -0.132 16.8 6.672 4330 18 5.02
677.27 1.21 3.58 0.748 0.595 -1.92 2.14 -- -0.178 16.5 6.676 4349 18.1 4.62
511.28 1.05 3.58 1.07 0.475 -3.85 -- -16.3 -0.132 16.8 6.672 4330 18 5.02
677.88 1.21 3.54 0.692 0.468 -1.58 -- -- -0.162 16.3 6.602 4334 18.1 4.33
523.36 1.07 3.57 1.06 -- -3.75 -- -16.2 -0.134 -- 6.687 4326 18 4.97
717.94 1.26 3.47 0.564 0.447 -- 1.85 -- -0.302 15.5 -- -- -- --
728.2 1.26 3.47 0.595 0.455 -- -- -- -0.291 14.9 -- -- -- --
667.8 1.2 3.5 1 -- -1.31 -- -- -0.171 -- 4.762 11593 17 5.41
685.93 1.22 3.54 -- 0.445 -1.46 -- -- -0.15 15.3 6.7 4318 18.3 3.7
740.13 1.27 3.47 0.576 -- -- -- -- -0.303 -- -- -- -- --
737.54 1.27 3.48 -- 0.444 -- -- -- -0.358 14.9 -- -- -- --
669.85 1.21 3.51 -- -- -1.27 -- -- -0.146 -- 6.044 10039 18.5 3.29
748.87 1.28 3.48 -- -- -- -- -- -0.367 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 510.55 wind 5 4320 > th dose dependent rect. 19 4
9 516.15 wind 7 4320 < th dose independent rect. 18 5
10 516.20 wind 7 4320 < th dose independent rect. 18 3
14 518.18 wind 5 4320 > th dose independent rect. 21 1
15 519.75 wind 7 4320 < th dose independent rect. 18 9
24 524.62 wind 7 4320 > th dose independent rect. 18 4
26 525.39 humidity 90 1440 < th dose dependent rect. 3 1
35 529.48 wind 7 4320 > th dose independent rect. 18 9
43 530.37 wind 5 4320 < th dose independent rect. 21 1
56 531.86 wind 9 4320 > th dose dependent rect. 19 7
141 539.35 humidity 80 1440 < th dose independent rect. 22 2
142 539.40 humidity 90 1440 < th dose dependent rect. 2 5
144 539.55 humidity 90 1440 < th dose dependent rect. 23 8
178 545.57 atmosphere 995 14400 > th dose independent rect. 17 1
181 545.76 atmosphere 995 14400 < th dose independent rect. 18 1
184 545.76 atmosphere 995 14400 < th dose dependent rect. 18 1
204 546.10 atmosphere 995 14400 > th dose independent rect. 17 4
238 548.67 temperature 20 1440 > th dose independent rect. 18 1
262 552.15 atmosphere 995 14400 > th dose independent rect. 7 14
263 552.24 atmosphere 995 14400 > th dose independent rect. 7 12
292 552.47 atmosphere 995 14400 > th dose independent rect. 9 12
304 552.80 atmosphere 995 14400 > th dose independent rect. 13 8
341 553.91 humidity 90 1440 < th dose dependent rect. 5 1
346 554.30 humidity 80 1440 < th dose dependent rect. 22 1
435 557.25 humidity 80 1440 > th dose independent rect. 22 4
473 558.42 humidity 70 1440 > th dose dependent rect. 1 6
497 558.95 atmosphere 995 14400 > th dose independent sin 22 NA
507 559.06 atmosphere 995 14400 < th dose independent sin 22 NA
551 560.34 humidity 80 270 < th dose independent rect. 21 10
567 560.85 humidity 70 1440 > th dose dependent rect. 5 1
579 561.04 atmosphere 995 14400 > th dose independent rect. 19 21
591 561.28 atmosphere 995 14400 < th dose dependent sin 22 NA
633 561.68 atmosphere 995 14400 < th dose independent rect. 18 22
669 562.04 humidity 70 1440 > th dose dependent rect. 3 1
737 562.71 humidity 70 1440 > th dose dependent rect. 1 3
761 562.86 temperature 20 720 < th dose independent rect. 18 1
764 562.89 humidity 80 1440 > th dose independent rect. 22 9
919 563.73 atmosphere 995 14400 > th dose independent no NA NA
921 563.73 atmosphere 995 14400 > th dose independent rect. 10 23
922 563.73 atmosphere 995 14400 > th dose independent rect. 12 23
923 563.73 atmosphere 995 14400 > th dose independent rect. 14 23
938 563.81 atmosphere 995 14400 > th dose independent rect. 12 21