BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0369500 Os01g0369500|AK100805
(297 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16510.1 | chr3:5617112-5618194 REVERSE LENGTH=361 81 7e-16
AT4G15755.1 | chr4:8970654-8971523 REVERSE LENGTH=290 76 2e-14
AT1G09070.1 | chr1:2927767-2928741 FORWARD LENGTH=325 75 4e-14
AT4G15740.1 | chr4:8964912-8966318 REVERSE LENGTH=469 57 8e-09
AT3G62780.1 | chr3:23222029-23222925 REVERSE LENGTH=299 50 1e-06
>AT3G16510.1 | chr3:5617112-5618194 REVERSE LENGTH=361
Length = 360
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 1 MAYRLLELTLVSASDLKKVTLFSRMHVYAVASISGSNV-PMPMHGTHADRNGGSNPAWNT 59
MA LEL + SA DL+ V L ++M VYAV I+G + T DR G S P WN
Sbjct: 1 MANLTLELNVYSAKDLENVNLITKMDVYAVVWITGDDSRKNHKEKTPIDRTGESEPTWNH 60
Query: 60 VLHFPVPARFDTRG-LALHVQLRARRSFGGHRDVGDVFVPLDDLLAGAH------DG-GE 111
+ F V R G L L V+L R FG +D+G+V VP+ +LL G+ DG G
Sbjct: 61 TVKFSVDQRLAHEGRLTLVVKLVCDRIFGD-KDLGEVQVPVLELLHGSSSPSSNGDGQGM 119
Query: 112 PRPASYQVRRPMSARAHGTLYFCYRF 137
R +YQVR P + G+L F YRF
Sbjct: 120 MRFVTYQVRTPF-GKGQGSLTFSYRF 144
>AT4G15755.1 | chr4:8970654-8971523 REVERSE LENGTH=290
Length = 289
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 1 MAYRLLELTLVSASDLKKVTLFSRMHVYAVASISGSNVPMPMHG-THADRNGGSNPAWNT 59
MA LEL + SA +L V L ++M+V+ +I+G N T DR GGSNP WN
Sbjct: 1 MANLTLELNINSARNLLNVNLITKMNVFTAITINGENTRKKQKAKTTVDRYGGSNPTWNQ 60
Query: 60 VLHFPVPARFDTRGLALHVQLRARRSFGGHRDVGDVFVPLDDLLAGAH-----DGG--EP 112
+ F V R G + V R G++++G V +PL +LL DG E
Sbjct: 61 TIKFSVDERSARGGHSSLVMRVISRRVLGNKEIGRVNIPLLELLNATTPSFNGDGNDHEM 120
Query: 113 RPASYQVRRPMSARAHGTLYFCYRF 137
+ SYQVR S + G+L F YRF
Sbjct: 121 KLMSYQVRT-SSGKRSGSLSFSYRF 144
>AT1G09070.1 | chr1:2927767-2928741 FORWARD LENGTH=325
Length = 324
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 1 MAYRLLELTLVSASDLKKVTLFSRMHVYAVASISGSNVPMPMHGTHADRNGGSNPAWNTV 60
M R L+LT++SA DLK V L + +YAV SI+G T D++ G+ P W
Sbjct: 1 MECRSLDLTIISAEDLKDVQLIGKQDLYAVVSINGDA--RTKQKTKVDKDCGTKPKWKHQ 58
Query: 61 LHFPV--PARFDTRGLALHVQLRARRSFGGHRDVGDVFVPLDDLLAGAHDGGEPRPASYQ 118
+ V A D R L L ++ A R G + VG+V VP+ +LL + G E + +Y
Sbjct: 59 MKLTVDDAAARDNR-LTLVFEIVADRPIAGDKPVGEVSVPVKELLD-QNKGDEEKTVTYA 116
Query: 119 VRRPMSARAHGTLYFCYRFTD 139
VR P + +A G+L F ++F +
Sbjct: 117 VRLP-NGKAKGSLKFSFKFGE 136
>AT4G15740.1 | chr4:8964912-8966318 REVERSE LENGTH=469
Length = 468
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 6 LELTLVSASDLKKVTLFSRMHVYAVASISGSNVPMPMHG-THADRNGGSNPAWNTVLHFP 64
LEL +VSASD+ + +M VYAV SI+G T D +GGSNP WN + F
Sbjct: 41 LELKIVSASDVNHIDATDKMDVYAVVSINGDTTQQKQAAKTPIDYDGGSNPTWNHTVKFS 100
Query: 65 VPARFDTRG-LALHVQLRARRSFGGHRD--VGDVFVPLDDLLAG 105
V R G L + V+L + G D +G+V V + DLLA
Sbjct: 101 VNEREANEGLLTITVKLFSYW-LEGDNDLYLGEVNVSVQDLLAS 143
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 5 LLELTLVSASDLKKVTLFSRMHVYAVASISGSNVPMPMHGTHADRNGGSNPAWNTVLHFP 64
+LEL + A +++ V FS M VYA +I T +NP WN ++ F
Sbjct: 231 ILELVIKFAKNIEDVNAFSSMDVYASVAILKDRKVKNRINTPVAFAAYTNPKWNQMMKFS 290
Query: 65 VPARFDTRG-LALHVQLRARRSFGGHRDVGDVFVPLDDLLAG-----AHDGGEP---RPA 115
+ + G L L V+L + R F G +++G V +P+ LL D G+ +
Sbjct: 291 IDEKSAQEGRLMLLVELMSHRPFLGDKEIGFVRLPMQQLLVSNPPYPLTDNGDANGMKLE 350
Query: 116 SYQVRRPMSARAHGTLYFCYRF 137
++ + P + G + F YRF
Sbjct: 351 THALTGPYGKK--GVVSFTYRF 370
>AT3G62780.1 | chr3:23222029-23222925 REVERSE LENGTH=299
Length = 298
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 23/148 (15%)
Query: 1 MAYRLLELTLVSASDLKKVTLFSRMHVYAVASISGSNVPMPMHG------THADRNGGSN 54
M R LE+ + SA LKKV S+M V+ +SG P T A R+GG++
Sbjct: 1 MGTRSLEINVTSAKGLKKV---SKMDVFVAVKLSGD----PKCSDHREQRTQAARDGGTS 53
Query: 55 PAW-NTVLHFPVPARF-DTRGLALHVQLRARRSFGGHRDVGDVFVPLDDLL--AGAHDGG 110
P W N V+ F + + L + +++ + G +D+G+V V + +LL G G
Sbjct: 54 PKWSNDVMKFILDQNLAEANRLVITFKIKCEQRGGVDKDIGEVHVQVKELLDHLGNDKTG 113
Query: 111 EPRPASYQVRRPMSARAHGTLYFCYRFT 138
+ R +YQ+ ++ + F Y FT
Sbjct: 114 Q-RYVTYQI-----GKSKADISFTYSFT 135
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,253,305
Number of extensions: 162313
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 6
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)