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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0149100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0175) R2 : 0.00261
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0401 (0.0367) R2dN8 : 0.00337 R2N8 : 0.00261
σ : 0.329
deviance : 49.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.64 0.317 3.04 0.31 0.132 -0.16 0.289 -0.544 -0.0401 6.64 90.05 273 -- --
46.5 0.32 3.04 0.273 0.0892 -0.146 -0.204 -- -0.049 4.21 90.05 273 -- --
45.81 0.315 3.04 0.307 0.131 -0.159 -- -0.457 -0.0414 6.34 90.32 261 -- --
46.59 0.32 3.04 0.276 0.093 -0.147 -- -- -0.0482 5.08 90.05 273 -- --
46.36 0.317 3.04 0.293 -- -0.0852 -- -0.433 -0.0233 -- 90 223 -- --
47.4 0.323 3.03 0.238 0.0532 -- 0.301 -- -0.0133 12.4 -- -- -- --
47.76 0.324 3.03 0.249 0.057 -- -- -- -0.0123 10.8 -- -- -- --
46.93 0.32 3.04 0.271 -- -0.111 -- -- -0.0376 -- 90.02 250 -- --
48.57 0.326 3.04 -- 0.0832 -0.123 -- -- -0.0724 5.4 90.05 273 -- --
47.96 0.324 3.03 0.248 -- -- -- -- -0.0127 -- -- -- -- --
49.39 0.329 3.04 -- 0.0552 -- -- -- -0.04 10.5 -- -- -- --
48.85 0.327 3.04 -- -- -0.0927 -- -- -0.0632 -- 90.02 250 -- --
49.58 0.329 3.04 -- -- -- -- -- -0.0401 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.50 humidity 80 90 < th dose dependent rect. 2 4
2 42.58 humidity 80 90 < th dose independent rect. 2 4
3 42.79 humidity 80 270 < th dose independent rect. 2 1
4 42.79 humidity 80 270 < th dose dependent rect. 2 1
5 42.84 radiation 1 4320 < th dose dependent rect. 23 1
7 42.85 humidity 80 10 < th dose dependent rect. 3 4
16 42.90 humidity 80 10 < th dose independent rect. 3 3
51 43.46 humidity 90 1440 < th dose dependent rect. 3 1
74 43.82 atmosphere 1000 10 < th dose independent rect. 11 1
84 43.84 wind 9 4320 < th dose independent rect. 18 3
88 43.87 humidity 50 1440 > th dose dependent rect. 3 1
97 43.92 wind 9 4320 < th dose independent rect. 18 5
103 43.98 atmosphere 995 4320 > th dose independent rect. 8 7
105 43.99 atmosphere 995 4320 < th dose dependent rect. 14 1
117 44.01 atmosphere 995 4320 < th dose independent rect. 14 1
154 44.07 wind 9 4320 > th dose independent rect. 18 10
160 44.08 atmosphere 995 4320 > th dose independent rect. 10 6
162 44.09 wind 9 4320 > th dose independent rect. 18 3
184 44.10 atmosphere 995 4320 > th dose independent rect. 12 4
186 44.10 wind 7 4320 > th dose dependent rect. 18 4
199 44.12 wind 9 4320 < th dose independent rect. 18 10
203 44.12 wind 7 4320 > th dose dependent rect. 18 9
209 44.13 wind 9 4320 > th dose dependent rect. 20 8
221 44.15 wind 9 4320 > th dose dependent rect. 20 1
236 44.16 humidity 90 4320 < th dose independent rect. 5 1
239 44.16 wind 5 4320 > th dose dependent rect. 21 1
245 44.18 atmosphere 995 4320 > th dose independent rect. 14 2
280 44.22 wind 9 4320 > th dose independent rect. 20 8
314 44.23 wind 9 4320 > th dose independent rect. 20 1
380 44.32 wind 5 4320 > th dose independent rect. 21 1
434 44.37 atmosphere 995 14400 < th dose independent rect. 3 12
435 44.37 atmosphere 995 14400 > th dose independent rect. 2 13
437 44.37 atmosphere 995 14400 < th dose independent rect. 24 16
453 44.38 atmosphere 995 14400 > th dose independent rect. 4 11
473 44.38 atmosphere 995 14400 < th dose dependent rect. 4 12
485 44.39 humidity 80 270 > th dose independent rect. 23 8
487 44.39 atmosphere 995 14400 > th dose independent rect. 6 9
515 44.41 atmosphere 995 14400 > th dose independent sin 4 NA
535 44.42 atmosphere 995 14400 < th dose independent sin 4 NA
552 44.42 atmosphere 995 14400 < th dose dependent sin 2 NA
588 44.44 humidity 80 14400 > th dose independent rect. 22 2
624 44.45 atmosphere 995 14400 < th dose dependent rect. 14 11
635 44.45 atmosphere 995 14400 < th dose dependent rect. 3 20
653 44.46 atmosphere 995 14400 < th dose dependent sin 18 NA
655 44.46 atmosphere 995 14400 < th dose dependent sin 22 NA
739 44.48 humidity 90 1440 < th dose independent rect. 2 2
766 44.49 atmosphere 995 14400 > th dose independent no NA NA
776 44.49 atmosphere 995 14400 > th dose independent rect. 1 22
779 44.49 atmosphere 995 14400 > th dose independent rect. 7 23
780 44.49 atmosphere 995 14400 > th dose independent rect. 10 23
781 44.49 atmosphere 995 14400 > th dose independent rect. 22 23
826 44.50 atmosphere 995 14400 > th dose independent rect. 12 16
831 44.50 atmosphere 995 14400 > th dose independent rect. 10 17
862 44.50 atmosphere 995 14400 > th dose independent rect. 6 20
961 44.51 atmosphere 995 14400 > th dose independent sin 21 NA
964 44.51 atmosphere 995 14400 < th dose independent no NA NA
976 44.51 atmosphere 995 14400 > th dose independent rect. 14 12
977 44.51 atmosphere 995 14400 > th dose independent rect. 11 13
981 44.51 atmosphere 995 14400 > th dose independent rect. 9 14
988 44.51 atmosphere 995 14400 < th dose independent rect. 14 14