BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0149100 Os05g0149100|AK107944
(279 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16510.1 | chr3:5617112-5618194 REVERSE LENGTH=361 82 4e-16
AT1G09070.1 | chr1:2927767-2928741 FORWARD LENGTH=325 76 2e-14
AT4G15755.1 | chr4:8970654-8971523 REVERSE LENGTH=290 76 2e-14
AT3G62780.1 | chr3:23222029-23222925 REVERSE LENGTH=299 62 3e-10
AT4G15740.1 | chr4:8964912-8966318 REVERSE LENGTH=469 60 1e-09
AT2G45760.1 | chr2:18847125-18847748 REVERSE LENGTH=208 55 4e-08
AT3G55470.1 | chr3:20564356-20566092 FORWARD LENGTH=157 51 8e-07
>AT3G16510.1 | chr3:5617112-5618194 REVERSE LENGTH=361
Length = 360
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHR--THADREGGRSPMWH 58
MA LE+ + SAK+L+ V + +KM VYAV I+G D R H+ T DR G P W+
Sbjct: 1 MANLTLELNVYSAKDLENVNLITKMDVYAVVWITGDDSRK-NHKEKTPIDRTGESEPTWN 59
Query: 59 APLRFPIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLV--AAAPEG-----GE 111
++F + A + L V L +R+FGD D+GEV VPV +L+ +++P G
Sbjct: 60 HTVKFSVDQRLAHEGRLTLVVKLVCDRIFGDKDLGEVQVPVLELLHGSSSPSSNGDGQGM 119
Query: 112 HRHLSYHVRRPVSGRKCGVLHISYQI 137
R ++Y VR P G+ G L SY+
Sbjct: 120 MRFVTYQVRTPF-GKGQGSLTFSYRF 144
>AT1G09070.1 | chr1:2927767-2928741 FORWARD LENGTH=325
Length = 324
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 5/140 (3%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTHADREGGRSPMWHAP 60
M R L++T++SA++LK V + K +YAV SI+ GD R +T D++ G P W
Sbjct: 1 MECRSLDLTIISAEDLKDVQLIGKQDLYAVVSIN-GDART-KQKTKVDKDCGTKPKWKHQ 58
Query: 61 LRFPIPDAGADMRAIALHVLLRAER-VFGDSDVGEVFVPVKDLVAAAPEGGEHRHLSYHV 119
++ + DA A + L + A+R + GD VGEV VPVK+L+ +G E + ++Y V
Sbjct: 59 MKLTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQN-KGDEEKTVTYAV 117
Query: 120 RRPVSGRKCGVLHISYQITD 139
R P +G+ G L S++ +
Sbjct: 118 RLP-NGKAKGSLKFSFKFGE 136
>AT4G15755.1 | chr4:8970654-8971523 REVERSE LENGTH=290
Length = 289
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 9/145 (6%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTH-RTHADREGGRSPMWHA 59
MA LE+ + SA+NL V + +KM V+ +I+G + R +T DR GG +P W+
Sbjct: 1 MANLTLELNINSARNLLNVNLITKMNVFTAITINGENTRKKQKAKTTVDRYGGSNPTWNQ 60
Query: 60 PLRFPIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLVAAAP-----EGGEH-- 112
++F + + A +L + + + RV G+ ++G V +P+ +L+ A +G +H
Sbjct: 61 TIKFSVDERSARGGHSSLVMRVISRRVLGNKEIGRVNIPLLELLNATTPSFNGDGNDHEM 120
Query: 113 RHLSYHVRRPVSGRKCGVLHISYQI 137
+ +SY VR SG++ G L SY+
Sbjct: 121 KLMSYQVRT-SSGKRSGSLSFSYRF 144
>AT3G62780.1 | chr3:23222029-23222925 REVERSE LENGTH=299
Length = 298
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 15/144 (10%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTH---RTHADREGGRSPMW 57
M R LE+ + SAK LKKV SKM V+ +S GDP+ H RT A R+GG SP W
Sbjct: 1 MGTRSLEINVTSAKGLKKV---SKMDVFVAVKLS-GDPKCSDHREQRTQAARDGGTSPKW 56
Query: 58 -HAPLRFPIPDAGADMRAIALHVLLRAERVFG-DSDVGEVFVPVKDLVA-AAPEGGEHRH 114
+ ++F + A+ + + ++ E+ G D D+GEV V VK+L+ + R+
Sbjct: 57 SNDVMKFILDQNLAEANRLVITFKIKCEQRGGVDKDIGEVHVQVKELLDHLGNDKTGQRY 116
Query: 115 LSYHVRRPVSGRKCGVLHISYQIT 138
++Y + G+ + +Y T
Sbjct: 117 VTYQI-----GKSKADISFTYSFT 135
>AT4G15740.1 | chr4:8964912-8966318 REVERSE LENGTH=469
Length = 468
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPT-HRTHADREGGRSPMWHA 59
M LE+ +VSA ++ + KM VYAV SI+G + +T D +GG +P W+
Sbjct: 36 MENPTLELKIVSASDVNHIDATDKMDVYAVVSINGDTTQQKQAAKTPIDYDGGSNPTWNH 95
Query: 60 PLRFPIPDAGADMRAIALHVLLRAERVFGDSD--VGEVFVPVKDLVAAAP 107
++F + + A+ + + V L + + GD+D +GEV V V+DL+A+ P
Sbjct: 96 TVKFSVNEREANEGLLTITVKLFSYWLEGDNDLYLGEVNVSVQDLLASNP 145
>AT2G45760.1 | chr2:18847125-18847748 REVERSE LENGTH=208
Length = 207
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 3 RRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTHADREGGRSPMWHAPLR 62
+R LE+ ++SA+ LK K + Y+V I D + + + D GG P+W
Sbjct: 7 KRSLEIEVISAEGLKVDRKPLKKKTYSVVRI---DEK--SWASKVDELGGSYPIWKDRFD 61
Query: 63 FPIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLVAAAPEGGEHRHLSYHVRRP 122
+P A +R I++ V R D +VG +PV D + G LSY +R
Sbjct: 62 MEMP-INASVRFISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFAPQGHLNFLSYRLRDE 120
Query: 123 VSGRKCGVLHIS 134
G KCG++++S
Sbjct: 121 Y-GDKCGIVNVS 131
>AT3G55470.1 | chr3:20564356-20566092 FORWARD LENGTH=157
Length = 156
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTH-ADREGGRSPMWHA 59
MA +LEV+L+S K LK+ K+ Y G T ++ A +GGR+P W+
Sbjct: 1 MAVGILEVSLISGKGLKRSDFLGKIDPYVEIQYKG-----QTRKSSVAKEDGGRNPTWND 55
Query: 60 PLRF--PIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLVAAAPEGG--EHRHL 115
L++ P +GAD + I ++ + D +GE V VK+L+ E G E R
Sbjct: 56 KLKWRAEFPGSGADYKLIV--KVMDHDTFSSDDFIGEATVHVKELLEMGVEKGTAELRPT 113
Query: 116 SYHV 119
Y++
Sbjct: 114 KYNI 117
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,739,768
Number of extensions: 133218
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 7
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)