Os01g0934100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0934100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.89 | 0.351 | 11.9 | 0.68 | 0.61 | -0.341 | -0.218 | -0.0286 | 0.0115 | 9.14 | 25 | 242 | -- | -- |
| 55.88 | 0.348 | 11.9 | 0.687 | 0.614 | -0.34 | -0.216 | -- | 0.0109 | 9.15 | 25 | 230 | -- | -- |
| 56.04 | 0.349 | 11.9 | 0.673 | 0.615 | -0.341 | -- | -0.0197 | 0.013 | 9.16 | 25 | 230 | -- | -- |
| 56.04 | 0.349 | 11.9 | 0.681 | 0.613 | -0.344 | -- | -- | 0.0158 | 9.18 | 25.02 | 230 | -- | -- |
| 72.77 | 0.397 | 11.9 | 0.691 | -- | -0.449 | -- | 0.00201 | 0.00962 | -- | 25.7 | 421 | -- | -- |
| 61.74 | 0.368 | 11.9 | 0.588 | 0.742 | -- | -0.237 | -- | -0.151 | 8.01 | -- | -- | -- | -- |
| 61.91 | 0.368 | 11.9 | 0.581 | 0.742 | -- | -- | -- | -0.151 | 8.01 | -- | -- | -- | -- |
| 71.45 | 0.394 | 11.9 | 0.767 | -- | -0.591 | -- | -- | 0.0836 | -- | 25.6 | 492 | -- | -- |
| 67.75 | 0.383 | 11.9 | -- | 0.651 | -0.242 | -- | -- | -0.105 | 8.73 | 25 | 212 | -- | -- |
| 91.98 | 0.448 | 11.9 | 0.588 | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
| 70.81 | 0.394 | 11.9 | -- | 0.745 | -- | -- | -- | -0.215 | 7.95 | -- | -- | -- | -- |
| 85.78 | 0.431 | 11.9 | -- | -- | -0.508 | -- | -- | -0.0177 | -- | 25.21 | 461 | -- | -- |
| 101.11 | 0.469 | 11.9 | -- | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.40 | radiation | 10 | 10 | > th | dose independent | rect. | 17 | 14 |
| 2 | 53.83 | humidity | 50 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 6 | 53.91 | humidity | 50 | 10 | < th | dose independent | rect. | 17 | 19 |
| 11 | 54.72 | radiation | 10 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 12 | 54.77 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 21 |
| 21 | 55.26 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 23 | 55.39 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 20 |
| 25 | 55.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 20 |
| 29 | 55.54 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 32 | 55.56 | humidity | 50 | 10 | < th | dose independent | sin | 8 | NA |
| 34 | 55.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 37 | 55.58 | humidity | 50 | 10 | < th | dose dependent | sin | 9 | NA |
| 47 | 55.68 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 61 | 55.78 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 66 | 55.84 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 23 |
| 79 | 55.93 | humidity | 70 | 14400 | > th | dose dependent | rect. | 24 | 5 |
| 82 | 55.94 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 5 |
| 85 | 55.95 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 21 |
| 88 | 55.95 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 23 |
| 104 | 56.01 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 152 | 56.10 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 12 |
| 154 | 56.11 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 23 |
| 174 | 56.14 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 180 | 56.15 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 216 | 56.20 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 23 |
| 254 | 56.26 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 23 |
| 255 | 56.26 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 277 | 56.32 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 6 |
| 293 | 56.35 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 23 |
| 306 | 56.37 | temperature | 25 | 90 | > th | dose dependent | sin | 7 | NA |
| 335 | 56.42 | temperature | 30 | 10 | > th | dose dependent | rect. | 15 | 4 |
| 355 | 56.43 | temperature | 30 | 90 | > th | dose dependent | rect. | 15 | 2 |
| 360 | 56.44 | humidity | 50 | 10 | < th | dose dependent | rect. | 16 | 2 |
| 387 | 56.46 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 13 |
| 599 | 56.70 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 637 | 56.74 | humidity | 50 | 10 | < th | dose dependent | no | NA | NA |
| 641 | 56.74 | humidity | 50 | 10 | < th | dose dependent | rect. | 11 | 7 |
| 801 | 56.75 | humidity | 50 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 826 | 56.79 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 842 | 56.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 20 | 16 |
| 877 | 56.86 | temperature | 25 | 270 | > th | dose independent | sin | 10 | NA |
| 921 | 56.91 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |