BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0934100 Os01g0934100|AK100995
(358 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16510.1 | chr3:5617112-5618194 REVERSE LENGTH=361 108 6e-24
AT1G09070.1 | chr1:2927767-2928741 FORWARD LENGTH=325 99 4e-21
AT4G15755.1 | chr4:8970654-8971523 REVERSE LENGTH=290 94 1e-19
AT3G62780.1 | chr3:23222029-23222925 REVERSE LENGTH=299 69 4e-12
AT4G15740.1 | chr4:8964912-8966318 REVERSE LENGTH=469 66 4e-11
AT2G33320.1 | chr2:14119526-14121334 REVERSE LENGTH=603 52 4e-07
AT4G01200.1 | chr4:506783-507535 REVERSE LENGTH=251 51 7e-07
AT3G55470.1 | chr3:20564356-20566092 FORWARD LENGTH=157 48 9e-06
>AT3G16510.1 | chr3:5617112-5618194 REVERSE LENGTH=361
Length = 360
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 89/150 (59%), Gaps = 15/150 (10%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGD---RRSRQRIATDRAGGRNPAWNA 57
MA TLEL + SAKDL++VNL++KM+VYAVV ++GD + +++ DR G P WN
Sbjct: 1 MANLTLELNVYSAKDLENVNLITKMDVYAVVWITGDDSRKNHKEKTPIDRTGESEPTWNH 60
Query: 58 APLRFTVPA----SGAGSLHVLLRAERALGDRDVGEVHIPLSELLSGAP------DGAVP 107
++F+V G +L V L +R GD+D+GEV +P+ ELL G+ DG
Sbjct: 61 T-VKFSVDQRLAHEGRLTLVVKLVCDRIFGDKDLGEVQVPVLELLHGSSSPSSNGDGQGM 119
Query: 108 AKFVSYQVRKISSGKPQGVLNFSYKIGEVT 137
+FV+YQVR GK QG L FSY+ T
Sbjct: 120 MRFVTYQVR-TPFGKGQGSLTFSYRFDSPT 148
>AT1G09070.1 | chr1:2927767-2928741 FORWARD LENGTH=325
Length = 324
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 9/146 (6%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIATDRAGGRNPAWNAAPL 60
M R+L+LT+ISA+DLKDV L+ K ++YAVVS++GD R++Q+ D+ G P W +
Sbjct: 1 MECRSLDLTIISAEDLKDVQLIGKQDLYAVVSINGDARTKQKTKVDKDCGTKPKWKHQ-M 59
Query: 61 RFTVPASGAG----SLHVLLRAERAL-GDRDVGEVHIPLSELLSGAPDGAVPAKFVSYQV 115
+ TV + A +L + A+R + GD+ VGEV +P+ ELL + K V+Y V
Sbjct: 60 KLTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQ--NKGDEEKTVTYAV 117
Query: 116 RKISSGKPQGVLNFSYKIGEVTQSGS 141
R + +GK +G L FS+K GE GS
Sbjct: 118 R-LPNGKAKGSLKFSFKFGEKYTYGS 142
>AT4G15755.1 | chr4:8970654-8971523 REVERSE LENGTH=290
Length = 289
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 88/146 (60%), Gaps = 15/146 (10%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGD---RRSRQRIATDRAGGRNPAWNA 57
MA TLEL + SA++L +VNL++KM V+ ++++G+ ++ + + DR GG NP WN
Sbjct: 1 MANLTLELNINSARNLLNVNLITKMNVFTAITINGENTRKKQKAKTTVDRYGGSNPTWNQ 60
Query: 58 APLRFTVPA----SGAGSLHVLLRAERALGDRDVGEVHIPLSELLSGAP-----DGA-VP 107
++F+V G SL + + + R LG++++G V+IPL ELL+ DG
Sbjct: 61 T-IKFSVDERSARGGHSSLVMRVISRRVLGNKEIGRVNIPLLELLNATTPSFNGDGNDHE 119
Query: 108 AKFVSYQVRKISSGKPQGVLNFSYKI 133
K +SYQVR SSGK G L+FSY+
Sbjct: 120 MKLMSYQVR-TSSGKRSGSLSFSYRF 144
>AT3G62780.1 | chr3:23222029-23222925 REVERSE LENGTH=299
Length = 298
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 17/142 (11%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRS----RQRIATDRAGGRNPAWN 56
M R+LE+ + SAK LK V SKM+V+ V LSGD + QR R GG +P W+
Sbjct: 1 MGTRSLEINVTSAKGLKKV---SKMDVFVAVKLSGDPKCSDHREQRTQAARDGGTSPKWS 57
Query: 57 AAPLRFTVPASGAGSLHVLL----RAERALG-DRDVGEVHIPLSELLSGAPDGAVPAKFV 111
++F + + A + +++ + E+ G D+D+GEVH+ + ELL + ++V
Sbjct: 58 NDVMKFILDQNLAEANRLVITFKIKCEQRGGVDKDIGEVHVQVKELLDHLGNDKTGQRYV 117
Query: 112 SYQVRKISSGKPQGVLNFSYKI 133
+YQ+ GK + ++F+Y
Sbjct: 118 TYQI-----GKSKADISFTYSF 134
>AT4G15740.1 | chr4:8964912-8966318 REVERSE LENGTH=469
Length = 468
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 10/111 (9%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIA---TDRAGGRNPAWNA 57
M TLEL ++SA D+ ++ KM+VYAVVS++GD +++ A D GG NP WN
Sbjct: 36 MENPTLELKIVSASDVNHIDATDKMDVYAVVSINGDTTQQKQAAKTPIDYDGGSNPTWNH 95
Query: 58 APLRFTV----PASGAGSLHVLLRAERALGDRD--VGEVHIPLSELLSGAP 102
++F+V G ++ V L + GD D +GEV++ + +LL+ P
Sbjct: 96 T-VKFSVNEREANEGLLTITVKLFSYWLEGDNDLYLGEVNVSVQDLLASNP 145
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 6 LELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIATD--RAGGRNPAWNAAPLRFT 63
LEL + AK+++DVN S M+VYA V++ DR+ + RI T A NP WN ++F+
Sbjct: 232 LELVIKFAKNIEDVNAFSSMDVYASVAILKDRKVKNRINTPVAFAAYTNPKWNQM-MKFS 290
Query: 64 VPASGAGSLHVLLRAERA-----LGDRDVGEVHIPLSELLSGAP 102
+ A ++L E LGD+++G V +P+ +LL P
Sbjct: 291 IDEKSAQEGRLMLLVELMSHRPFLGDKEIGFVRLPMQQLLVSNP 334
>AT2G33320.1 | chr2:14119526-14121334 REVERSE LENGTH=603
Length = 602
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 28/143 (19%)
Query: 6 LELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIATDRAGGRNPAWNAAPLRFTVP 65
LEL +ISA+DL V+ KM+ YAV + +R+ R+ D GG NP WN F V
Sbjct: 10 LELNIISAQDLAPVS--RKMKTYAVAWVHSERKLTTRV--DYTGGGNPTWNDK-FVFRVS 64
Query: 66 A----SGAGSLHVLLRAERALGDRDVGEVHIPLSELLSGAPDGAVPA------------- 108
+ ++ V + A D VG V + +S L+ P P
Sbjct: 65 EDFLYADTSAVVVEIYALHWFRDVHVGTVRVLISNLI---PPNRRPGYRSNEEYRRTPPP 121
Query: 109 --KFVSYQVRKISSGKPQGVLNF 129
+FV+ QVR+ SG+PQG+LN
Sbjct: 122 GMRFVALQVRR-PSGRPQGILNI 143
>AT4G01200.1 | chr4:506783-507535 REVERSE LENGTH=251
Length = 250
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 4 RTLELTLISAKDLKD-VNLLSKMEVYAVVSLSGDRRSRQRIATDRAGGRNPAWNAAPLRF 62
+ LE+ LISA+ LK+ L +++ YA V + + R RI DR G NP WN +
Sbjct: 5 QVLEINLISAQGLKEPTGKLRRLQTYASVWVDSSSKLRTRI--DRIGSENPIWNDKFVFQ 62
Query: 63 TVP---ASGAGSLHVLLRAERALGDRDVGEVHIPLSELLSGAPDGAVPA-KFVSYQVRKI 118
P +S + + + A L D +G V +S L P AV V+ Q+R+
Sbjct: 63 VSPEFLSSETSGVSIEIYAVGYLRDHLIGTVRFLVSNFL---PTAAVKVPSLVALQIRR- 118
Query: 119 SSGKPQGVLNFSYKIGEVTQ 138
SGK GVLN + + + ++
Sbjct: 119 PSGKFHGVLNIAAMVMDASE 138
>AT3G55470.1 | chr3:20564356-20566092 FORWARD LENGTH=157
Length = 156
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIATDRAGGRNPAWN-AAP 59
MA LE++LIS K LK + L K++ Y + G ++R+ GGRNP WN
Sbjct: 1 MAVGILEVSLISGKGLKRSDFLGKIDPYVEIQYKG--QTRKSSVAKEDGGRNPTWNDKLK 58
Query: 60 LRFTVPASGAGSLHV--LLRAERALGDRDVGEVHIPLSELLS-GAPDGAVPAKFVSYQV 115
R P SGA + ++ + D +GE + + ELL G G + Y +
Sbjct: 59 WRAEFPGSGADYKLIVKVMDHDTFSSDDFIGEATVHVKELLEMGVEKGTAELRPTKYNI 117
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,622,291
Number of extensions: 127172
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 9
Length of query: 358
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,364,969
Effective search space: 2158162002
Effective search space used: 2158162002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)