BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0934100 Os01g0934100|AK100995
(358 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0934100 C2 calcium/lipid-binding region, CaLB domain c... 303 2e-82
Os05g0370300 C2 calcium/lipid-binding region, CaLB domain c... 164 1e-40
Os07g0670300 C2 calcium/lipid-binding region, CaLB domain c... 163 2e-40
Os05g0149100 C2 calcium/lipid-binding region, CaLB domain c... 135 4e-32
Os07g0670200 C2 calcium/lipid-binding region, CaLB domain c... 133 2e-31
Os01g0369500 C2 calcium/lipid-binding region, CaLB domain c... 120 1e-27
>Os01g0934100 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 358
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/238 (67%), Positives = 161/238 (67%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIATDRAGGRNPAWNAAPL 60
MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIATDRAGGRNPAWNAAPL
Sbjct: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIATDRAGGRNPAWNAAPL 60
Query: 61 RFTVPASGAGSLHVLLRAERALGDRDVGEVHIPLSELLSGAPDGAVPAKFVSYQVRKISS 120
RFTVPASGAGSLHVLLRAERALGDRDVGEVHIPLSELLSGAPDGAVPAKFVSYQVRKISS
Sbjct: 61 RFTVPASGAGSLHVLLRAERALGDRDVGEVHIPLSELLSGAPDGAVPAKFVSYQVRKISS 120
Query: 121 GKPQGVLNFSYKIGEVTQSGSYPGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
GKPQGVLNFSYKIGEVTQSGSYPGAS
Sbjct: 121 GKPQGVLNFSYKIGEVTQSGSYPGASPPVAYGQAPPAPAYPPSAAAAAAYPPQSTYPPPT 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXGKGNEXXXXXXXXXXXXXXXXXXKPAKAGEPVT 238
GKGNE KPAKAGEPVT
Sbjct: 181 AYPTAAKADGSAAAAYPPQSAYPPPGKGNEPSTAYPPPAGYPPATGSSKPAKAGEPVT 238
>Os05g0370300 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 303
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 108/145 (74%), Gaps = 7/145 (4%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIATDRAGGRNPAWNA--A 58
MA RTLELTL+SA DL+ VNL+SKMEVYAVV L+GD R+RQR+ATDRAGGRNP+W A
Sbjct: 86 MACRTLELTLLSASDLRGVNLVSKMEVYAVVYLAGDPRARQRVATDRAGGRNPSWKGKDA 145
Query: 59 PLRFTVPASGAGS--LHVLLRAERA--LGDRDVGEVHIPLSELLSGAPDGAVPAKFVSYQ 114
+R VPASGAGS + VLLRAERA GDRDVGEV +PL ++L+G+ DG A SY
Sbjct: 146 TVRLAVPASGAGSGAVRVLLRAERAGLGGDRDVGEVFVPLPDVLAGSGDGPTAAAVASYP 205
Query: 115 VRKISSGK-PQGVLNFSYKIGEVTQ 138
VRK+ S + GVLN SYK+G V
Sbjct: 206 VRKVGSSRTTHGVLNLSYKLGGVVH 230
>Os07g0670300 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 310
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/140 (61%), Positives = 107/140 (76%), Gaps = 5/140 (3%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIATDRAGGRNPAWNAAPL 60
MA R LE+TL SA+DLK+VN +S+MEVYAV ++SGD +RQ D GGR+PAWNA L
Sbjct: 1 MAYRVLEVTLHSARDLKNVNFISRMEVYAVATISGDPLTRQCTPPDPYGGRHPAWNAT-L 59
Query: 61 RFTVP---ASGAGSLHVLLRAERALGDRDVGEVHIPLSELLSGAPD-GAVPAKFVSYQVR 116
RFTVP AS AG LHVLLRAER+LGDRD+GEV IPL+++LSG D GA P +F SYQVR
Sbjct: 60 RFTVPPTAASAAGCLHVLLRAERSLGDRDIGEVIIPLADVLSGPYDLGARPPQFASYQVR 119
Query: 117 KISSGKPQGVLNFSYKIGEV 136
K+ + +GVL+ SY++G V
Sbjct: 120 KLHRSETRGVLHLSYRLGPV 139
>Os05g0149100 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 279
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 97/141 (68%), Gaps = 8/141 (5%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGD--RRSRQRIATDRAGGRNPAWNAA 58
MA+R LE+TL+SAK+LK V + SKM VYAV S+SG R R DR GGR+P W+A
Sbjct: 1 MARRVLEVTLVSAKNLKKVTMFSKMRVYAVASISGGDPRVPTHRTHADREGGRSPMWHA- 59
Query: 59 PLRFTVPASGAG----SLHVLLRAERALGDRDVGEVHIPLSELLSGAPDGAVPAKFVSYQ 114
PLRF +P +GA +LHVLLRAER GD DVGEV +P+ +L++ AP+G + +SY
Sbjct: 60 PLRFPIPDAGADMRAIALHVLLRAERVFGDSDVGEVFVPVKDLVAAAPEGG-EHRHLSYH 118
Query: 115 VRKISSGKPQGVLNFSYKIGE 135
VR+ SG+ GVL+ SY+I +
Sbjct: 119 VRRPVSGRKCGVLHISYQITD 139
>Os07g0670200 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 232
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 95/139 (68%), Gaps = 9/139 (6%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIATDRAGGRNPAWNAAPL 60
MA R LE+TLISA++LK VNL++ MEVYAVVS+SG+ +RQ DR GGRNP WNA L
Sbjct: 1 MAYRALEVTLISARNLKKVNLITPMEVYAVVSVSGNPLARQCTLPDRHGGRNPTWNAT-L 59
Query: 61 RFTVPASGAGS-LHVLLRAERALGDRDVGEVHIPLSELLSGAPDGAVPAKFVSYQVRKI- 118
VPA+ G+ LHVLLR ERALGDRDVGEV +P+++L A A Y V K+
Sbjct: 60 HLAVPAAAPGAFLHVLLRTERALGDRDVGEVFVPVADLQLAA------AAHYQYLVHKVQ 113
Query: 119 SSGKPQGVLNFSYKIGEVT 137
S+ + GVL+ SY++G V
Sbjct: 114 STTEHCGVLSLSYRLGPVV 132
>Os01g0369500 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 297
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 87/144 (60%), Gaps = 8/144 (5%)
Query: 1 MAQRTLELTLISAKDLKDVNLLSKMEVYAVVSLSGDRRSRQRIAT--DRAGGRNPAWNAA 58
MA R LELTL+SA DLK V L S+M VYAV S+SG T DR GG NPAWN
Sbjct: 1 MAYRLLELTLVSASDLKKVTLFSRMHVYAVASISGSNVPMPMHGTHADRNGGSNPAWNTV 60
Query: 59 PLRFTVPA---SGAGSLHVLLRAERAL-GDRDVGEVHIPLSELLSGAPDGAVPAKFVSYQ 114
L F VPA + +LHV LRA R+ G RDVG+V +PL +LL+GA DG P + SYQ
Sbjct: 61 -LHFPVPARFDTRGLALHVQLRARRSFGGHRDVGDVFVPLDDLLAGAHDGGEP-RPASYQ 118
Query: 115 VRKISSGKPQGVLNFSYKIGEVTQ 138
VR+ S + G L F Y+ +V
Sbjct: 119 VRRPMSARAHGTLYFCYRFTDVKH 142
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,112,786
Number of extensions: 250077
Number of successful extensions: 467
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 7
Length of query: 358
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 256
Effective length of database: 11,709,973
Effective search space: 2997753088
Effective search space used: 2997753088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)