BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0125500 Os05g0125500|AK066314
(409 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0125500 Similar to Isovaleryl-CoA dehydrogenase, mitoc... 795 0.0
AK071923 696 0.0
Os01g0159400 Similar to Acyl-coenzyme A oxidase 4, peroxiso... 155 6e-38
Os05g0163700 Similar to Acyl-coenzyme A oxidase 4, peroxiso... 152 4e-37
Os06g0346300 Acyl-CoA dehydrogenase family protein 121 7e-28
Os06g0347100 Similar to Acyl-coenzyme A oxidase 4, peroxiso... 98 9e-21
Os07g0675000 Acyl-CoA dehydrogenase, type1/2, C-terminal do... 97 2e-20
>Os05g0125500 Similar to Isovaleryl-CoA dehydrogenase, mitochondrial precursor
(EC 1.3.99.10) (IVD)
Length = 409
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/409 (94%), Positives = 386/409 (94%)
Query: 1 MAAAQRWLPGILRRGDGXXXXXXXXXXXXXFDDTQEQFKESVHKFAQETIAPHAAAIDAS 60
MAAAQRWLPGILRRGDG FDDTQEQFKESVHKFAQETIAPHAAAIDAS
Sbjct: 1 MAAAQRWLPGILRRGDGLARRLYSSASSLLFDDTQEQFKESVHKFAQETIAPHAAAIDAS 60
Query: 61 NHFPKDVNLWKLMGDFNLHGLTAPEEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN 120
NHFPKDVNLWKLMGDFNLHGLTAPEE HCIAMEEISRASGSVGLSYGAHSN
Sbjct: 61 NHFPKDVNLWKLMGDFNLHGLTAPEEYGGMGLGYMYHCIAMEEISRASGSVGLSYGAHSN 120
Query: 121 LCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVING 180
LCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVING
Sbjct: 121 LCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVING 180
Query: 181 NKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCEL 240
NKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCEL
Sbjct: 181 NKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCEL 240
Query: 241 VFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQFG 300
VFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQFG
Sbjct: 241 VFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQFG 300
Query: 301 RPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVAL 360
RPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVAL
Sbjct: 301 RPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVAL 360
Query: 361 QAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKEE 409
QAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKEE
Sbjct: 361 QAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKEE 409
>AK071923
Length = 358
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/348 (97%), Positives = 338/348 (97%)
Query: 62 HFPKDVNLWKLMGDFNLHGLTAPEEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNL 121
HFPKDVNLWKLMGDFNLHGLTAPEE HCIAMEEISRASGSVGLSYGAHSNL
Sbjct: 11 HFPKDVNLWKLMGDFNLHGLTAPEEYGGMGLGYMYHCIAMEEISRASGSVGLSYGAHSNL 70
Query: 122 CINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGN 181
CINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGN
Sbjct: 71 CINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGN 130
Query: 182 KMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 241
KMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV
Sbjct: 131 KMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 190
Query: 242 FENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQFGR 301
FENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQFGR
Sbjct: 191 FENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQFGR 250
Query: 302 PIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVALQ 361
PIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVALQ
Sbjct: 251 PIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVALQ 310
Query: 362 AIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKEE 409
AIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKEE
Sbjct: 311 AIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKEE 358
>Os01g0159400 Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX
4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p)
(AtG6)
Length = 433
Score = 155 bits (392), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 155/308 (50%), Gaps = 6/308 (1%)
Query: 99 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNS 158
I M EI+R S HS+L + + GS QK KYLP L VG A++EPN
Sbjct: 115 ITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCWALTEPNH 174
Query: 159 GSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGM 218
GSD S+ A KV GG+ I+G K W N A LVV A+ A +K + FI+ KG
Sbjct: 175 GSDASSLITTATKVPGGWHIDGQKRWIGNSTFADVLVVLARN---ANTKQLNGFIVRKGA 231
Query: 219 PGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEGKGVYVMMSG-LDLERLVLAAG 277
PG + +K+G+R ++VF FVP E+ L G + +S L + R+++A
Sbjct: 232 PGLKATKIENKIGLRMVQNGDIVFNKVFVPEEDRL--PGVNSFQDISKVLAISRVMVAWQ 289
Query: 278 PIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNG 337
PIG+ DV Y+++R+QFG P+ FQ Q KL M ++Q+ + + + ++G
Sbjct: 290 PIGISMGVFDVCHRYLKERKQFGVPLVAFQLNQEKLVRMLGNIQAMLLVGWRLCKLYESG 349
Query: 338 KVDRKDCAGVILFAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIR 397
K+ + + + A +V + LGGNG + ++ + D + GT +I
Sbjct: 350 KMTPGHASLGKGWTSRMAREVVSLGRELLGGNGILADFLVAKAFCDLEPIYSYEGTYDIN 409
Query: 398 RMIIGREL 405
++ GRE+
Sbjct: 410 SLVTGREI 417
>Os05g0163700 Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX
4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p)
(AtG6)
Length = 430
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 161/308 (52%), Gaps = 6/308 (1%)
Query: 99 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNS 158
I++ E++R S HS+L ++ + GS AQK KYLP L +G A++EP+
Sbjct: 112 ISVAEVARVDASCSTFILVHSSLAMSTIALCGSEAQKQKYLPSLTQFRTIGCWALTEPDY 171
Query: 159 GSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGM 218
GSD S++ A KV GG+ ++G K W NG A L++ A+ + + + FI++KG
Sbjct: 172 GSDASSLRTAATKVPGGWHLDGQKRWIGNGTFADVLIILARN---SDTNQLNGFIVKKGA 228
Query: 219 PGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEGKGVYVMMSG-LDLERLVLAAG 277
PG + +K+G+R ++V FVP E+ L G + ++ L + R+++A
Sbjct: 229 PGLKCTKIENKIGLRMVQNADIVLNKVFVPDEDRL--TGINSFQDINKVLAMSRIMVAWQ 286
Query: 278 PIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNG 337
PIG+ D+ Y+++R+QFG P+ FQ Q KL M ++Q+ + + + ++G
Sbjct: 287 PIGISMGVFDMCHRYLKERKQFGVPLAAFQLNQEKLVRMLGNIQAMLLVGWRLCKLYESG 346
Query: 338 KVDRKDCAGVILFAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIR 397
K+ + + +++A +V + LGGNG + ++ + D + GT +I
Sbjct: 347 KMTPGHASLGKAWTSKKAREVVSLGRELLGGNGILADFLVAKAFCDLEPIFSYEGTYDIN 406
Query: 398 RMIIGREL 405
++ GRE+
Sbjct: 407 SLVTGREI 414
>Os06g0346300 Acyl-CoA dehydrogenase family protein
Length = 304
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 136/301 (45%), Gaps = 33/301 (10%)
Query: 126 LVRHGSPAQKLKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWC 185
+ + GS AQK KYL L + V A+SEPN GSD S+ A KV GG+++NG K W
Sbjct: 4 IAQLGSEAQKEKYLRPLSKMQKVCVYALSEPNHGSDASSLNTTARKVPGGWILNGQKRWP 63
Query: 186 TNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENC 245
N A VV A + I FI+ G PG ++ +K+ +R C+++ E+
Sbjct: 64 ANSSFADIFVVLA---CNTSTNQINGFIVNGGAPGLKISKIDNKMSLRVVQNCDILLEDV 120
Query: 246 FVPHEN--------------------VLGEEGKGVYV-MMSGLDLERLVLAAGPIGLMQA 284
FVP ++ +G+ YV + L R+++A IG+
Sbjct: 121 FVPDDDRLPGANSFQDLVKIYSISPHTIGDTDLTDYVAYIQALSFSRVIVAWISIGIAAG 180
Query: 285 CLDVAVPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDC 344
D + Y+ +R+QFG P+ FQ Q KL + + + D+G++
Sbjct: 181 VYDACLRYLGERKQFGAPLAAFQLNQEKLMWL---------LGWRLYELHDSGRMTTGQA 231
Query: 345 AGVILFAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRE 404
+ + ++A + + LGGNG + ++ G+ D + G+ E+ +I+ R+
Sbjct: 232 SLGKAWITKKARETVALGRELLGGNGIVTDFHVGKAFCDMESLYTYEGSYEVNALIVARD 291
Query: 405 L 405
+
Sbjct: 292 I 292
>Os06g0347100 Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX
4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p)
(AtG6)
Length = 242
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 4/234 (1%)
Query: 172 VDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLG 231
V GG+++NG K W NG A VV A + I FI+ G PG ++ +K
Sbjct: 1 VPGGWILNGQKRWPANGSFADVFVVLACN---TSNNQINGFIVNGGSPGLKISKIENKTS 57
Query: 232 MRGSDTCELVFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVP 291
+R C+++ E+ FVP ++ L ++ L +++A IG+ D +
Sbjct: 58 LRVVQNCDILLEDVFVPDDDRL-PGANSFQDLVKALSFSCVIVAWISIGIAAGVYDACLR 116
Query: 292 YVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFA 351
Y+ +R+QFG P+ FQ Q KL M ++Q+ + + + D+G++ + +
Sbjct: 117 YLGERKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWI 176
Query: 352 AERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGREL 405
++A + + LGGNG + ++ G+ D + G+ E+ ++ RE+
Sbjct: 177 TKQARETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREI 230
>Os07g0675000 Acyl-CoA dehydrogenase, type1/2, C-terminal domain containing
protein
Length = 831
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 12/288 (4%)
Query: 126 LVRHGSPAQKLKYLPKLISGEHVGALAMSEPN-SGSDVVSMKCKAEKVDGGYVINGNKMW 184
L+R+G+ Q+ ++L L+ G+ AM+EP + SD +++C + YVING K W
Sbjct: 538 LLRYGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKWW 597
Query: 185 CTNG--PSAQTLVVYAKTDIAAGS-KGITAFIIEKGMPGFSTAQKLDKLGMRGSDT--CE 239
+ P Q LV+ KTD +A K + +++ PG + L G + E
Sbjct: 598 TSGAMDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLLVFGFDDAPHGHAE 657
Query: 240 LVFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQF 299
+ FEN VP N+L EG+G + L RL IG + +++ V R F
Sbjct: 658 ITFENVRVPATNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMNLMVERALSRTTF 717
Query: 300 GRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVA 359
G+ I + LA L+ +R V A D + K G++ A A +A
Sbjct: 718 GKKIAQHGSFLADLAKCRVELEQARLLVLEAADQLD--RHGNKKARGILAMAKVAAPNMA 775
Query: 360 LQ----AIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGR 403
L+ A+Q GG G ++ L A+ I G E+ I +
Sbjct: 776 LKVLDMAMQVHGGAGLSSDTVLSHLWATARTLRIADGPDEVHLGTIAK 823
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,143,621
Number of extensions: 534741
Number of successful extensions: 942
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 7
Length of query: 409
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 306
Effective length of database: 11,657,759
Effective search space: 3567274254
Effective search space used: 3567274254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)