Os05g0125500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.10) (IVD).
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Os05g0125500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.10) (IVD).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.47 | 0.647 | 8.84 | -0.933 | 0.987 | -0.603 | -0.572 | 0.602 | 0.0553 | 23 | 1006 | 218 | -- | -- |
| 191.15 | 0.644 | 8.83 | -0.941 | 0.973 | -0.592 | -0.625 | -- | 0.0374 | 23.1 | 1006 | 184 | -- | -- |
| 190.53 | 0.643 | 8.84 | -0.909 | 0.997 | -0.597 | -- | 0.622 | 0.0572 | 22.9 | 1006 | 181 | -- | -- |
| 192.65 | 0.646 | 8.84 | -0.916 | 0.992 | -0.583 | -- | -- | 0.0377 | 23 | 1006 | 152 | -- | -- |
| 251.64 | 0.739 | 8.82 | -0.89 | -- | -0.661 | -- | 0.618 | 0.073 | -- | 1006 | 248 | -- | -- |
| 218.78 | 0.693 | 8.9 | -0.924 | 1.04 | -- | -0.475 | -- | -0.226 | 22.5 | -- | -- | -- | -- |
| 219.67 | 0.694 | 8.9 | -0.904 | 1.04 | -- | -- | -- | -0.224 | 22.4 | -- | -- | -- | -- |
| 253.45 | 0.741 | 8.81 | -0.895 | -- | -0.638 | -- | -- | 0.0652 | -- | 1006 | 248 | -- | -- |
| 214.77 | 0.683 | 8.84 | -- | 1 | -0.528 | -- | -- | 0.082 | 22.8 | 1006 | 104 | -- | -- |
| 286.29 | 0.791 | 8.87 | -0.886 | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
| 241.2 | 0.726 | 8.88 | -- | 1.04 | -- | -- | -- | -0.124 | 22.4 | -- | -- | -- | -- |
| 274.44 | 0.772 | 8.79 | -- | -- | -0.649 | -- | -- | 0.156 | -- | 1006 | 292 | -- | -- |
| 307.02 | 0.818 | 8.85 | -- | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.39 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 2 | 188.70 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 3 | 189.36 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 5 | 190.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 6 | 190.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 14 | 190.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 15 | 190.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 16 | 190.37 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 21 | 190.50 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 23 | 190.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 29 | 190.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 31 | 190.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 33 | 190.77 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 34 | 190.79 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 38 | 190.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 47 | 191.16 | atmosphere | 1005 | 30 | < th | dose independent | rect. | 13 | 20 |
| 57 | 191.31 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 65 | 191.45 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 12 | 19 |
| 94 | 191.98 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 109 | 192.28 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 116 | 192.44 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 135 | 192.76 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 148 | 192.99 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 199 | 193.82 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 227 | 194.21 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 8 | 22 |
| 238 | 194.32 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 256 | 194.58 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 13 |
| 272 | 194.67 | atmosphere | 1005 | 270 | > th | dose independent | sin | 15 | NA |
| 288 | 194.80 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 20 | 23 |
| 318 | 195.13 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 10 | 23 |
| 321 | 195.16 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 13 | 23 |
| 328 | 195.21 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 330 | 195.21 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 332 | 195.21 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 384 | 195.21 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 386 | 195.21 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 388 | 195.21 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 450 | 195.32 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 6 |
| 456 | 195.36 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 11 | 23 |
| 467 | 195.51 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 478 | 195.61 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 11 | 19 |
| 479 | 195.61 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 483 | 195.65 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 2 |
| 485 | 195.66 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 22 | 23 |
| 490 | 195.67 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 544 | 195.86 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 13 | 23 |
| 578 | 196.02 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 584 | 196.05 | atmosphere | 1005 | 270 | > th | dose independent | no | NA | NA |
| 597 | 196.11 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 20 | 23 |
| 611 | 196.19 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 623 | 196.26 | wind | 9 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 675 | 196.53 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 2 |
| 693 | 196.59 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 725 | 196.78 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 22 | 23 |
| 737 | 196.83 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 24 | 23 |
| 742 | 196.88 | atmosphere | 1005 | 30 | > th | dose independent | sin | 15 | NA |
| 747 | 196.91 | atmosphere | 1005 | 270 | < th | dose independent | sin | 14 | NA |
| 817 | 197.25 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
| 843 | 197.35 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 847 | 197.37 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 879 | 197.48 | wind | 1 | 90 | < th | dose independent | rect. | 1 | 4 |
| 903 | 197.56 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 923 | 197.61 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 947 | 197.70 | atmosphere | 1005 | 30 | > th | dose independent | no | NA | NA |
| 963 | 197.75 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 978 | 197.78 | wind | 7 | 4320 | < th | dose independent | sin | 16 | NA |
| 981 | 197.78 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 988 | 197.83 | wind | 7 | 4320 | > th | dose independent | sin | 16 | NA |
| 996 | 197.84 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 22 | 22 |