BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0125500 Os05g0125500|AK066314
(409 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G45300.1 | chr3:16621659-16624848 REVERSE LENGTH=410 680 0.0
AT3G51840.1 | chr3:19225653-19229008 REVERSE LENGTH=437 148 7e-36
AT3G06810.1 | chr3:2146534-2150654 FORWARD LENGTH=825 99 5e-21
AT5G65110.1 | chr5:26009821-26012482 REVERSE LENGTH=693 66 3e-11
>AT3G45300.1 | chr3:16621659-16624848 REVERSE LENGTH=410
Length = 409
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/378 (85%), Positives = 346/378 (91%)
Query: 32 DDTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEEXXXXX 91
DDTQ QFKESV KFAQ+ IAPHA ID +N FPKDVNLWKLMG+FNLHG+TAPEE
Sbjct: 32 DDTQLQFKESVSKFAQDNIAPHAERIDKTNSFPKDVNLWKLMGEFNLHGITAPEEYGGLG 91
Query: 92 XXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGAL 151
HCIAMEEISRASGSV LSYGAHSNLCINQLVR+G+ AQK KYLPKLISGEHVGAL
Sbjct: 92 LGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEHVGAL 151
Query: 152 AMSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAGSKGITA 211
AMSEPN+GSDVV MKCKAEKVDGGY++NGNKMWCTNGPSA+TLVVYAKTD AGSKGITA
Sbjct: 152 AMSEPNAGSDVVGMKCKAEKVDGGYILNGNKMWCTNGPSAETLVVYAKTDTKAGSKGITA 211
Query: 212 FIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEGKGVYVMMSGLDLER 271
FIIEKGM GFSTAQKLDKLGMRGSDTCELVFENCFVP EN+L +EGKGVYV+MSGLDLER
Sbjct: 212 FIIEKGMTGFSTAQKLDKLGMRGSDTCELVFENCFVPEENILDKEGKGVYVLMSGLDLER 271
Query: 272 LVLAAGPIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSFVYSVA 331
LVLAAGP+G+MQACLD +PY+RQREQFGRP+GEFQFIQGK+ADMYT+LQSSRS+VYSVA
Sbjct: 272 LVLAAGPLGIMQACLDNVLPYIRQREQFGRPVGEFQFIQGKVADMYTALQSSRSYVYSVA 331
Query: 332 RDCDNGKVDRKDCAGVILFAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLFEIGA 391
RDCDNGKVD KDCAG IL AAERATQVALQAIQCLGGNGYINEY TGRLLRDAKL+EIGA
Sbjct: 332 RDCDNGKVDPKDCAGTILCAAERATQVALQAIQCLGGNGYINEYATGRLLRDAKLYEIGA 391
Query: 392 GTSEIRRMIIGRELFKEE 409
GTSEIRR++IGRELFKEE
Sbjct: 392 GTSEIRRIVIGRELFKEE 409
>AT3G51840.1 | chr3:19225653-19229008 REVERSE LENGTH=437
Length = 436
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 156/310 (50%), Gaps = 6/310 (1%)
Query: 97 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEP 156
+ IA EI+R S HS+L + + GS AQK KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 157 NSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEK 216
++GSD + A KV+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 217 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEGKGVYVMMSG-LDLERLVLA 275
PG + +K+G+R +++ +N FVP E+ L G + S L + R+++A
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVA 292
Query: 276 AGPIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCD 335
PIG+ D+ Y+++R+QFG P+ FQ Q KL M ++Q+ + + + +
Sbjct: 293 WQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYE 352
Query: 336 NGKVDRKDCAGVILFAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSE 395
G++ + + + +A + A + LGGNG + ++ + D + GT +
Sbjct: 353 TGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYD 412
Query: 396 IRRMIIGREL 405
I ++ GRE+
Sbjct: 413 INTLVTGREV 422
>AT3G06810.1 | chr3:2146534-2150654 FORWARD LENGTH=825
Length = 824
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 125/288 (43%), Gaps = 12/288 (4%)
Query: 126 LVRHGSPAQKLKYLPKLISGEHVGALAMSEPN-SGSDVVSMKCKAEKVDGGYVINGNKMW 184
++R+G+ Q ++L L+ G AM+EP + SD +++C + YVING K W
Sbjct: 530 ILRYGNKEQISEWLIPLLEGRIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWW 589
Query: 185 CTNG--PSAQTLVVYAKTDI-AAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT--CE 239
+ P + L++ KTD A K + +++ PG S + L G + E
Sbjct: 590 TSGAMDPRCRVLILMGKTDFNAPKHKQQSMILVDMRTPGISVKRPLTVFGFDDAPHGHAE 649
Query: 240 LVFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQF 299
+ FEN VP +N+L EG+G + L RL IG + +++ R+ F
Sbjct: 650 ISFENVVVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMELMAQRALSRKTF 709
Query: 300 GRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVA 359
G+ I + LA + L+ +R V A D K K G++ A A +A
Sbjct: 710 GKFIAQHGSFVSDLAKLRVELEGTRLLVLEAADHLD--KFGNKKARGILAMAKVAAPNMA 767
Query: 360 LQ----AIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGR 403
L+ AIQ G G ++ L A+ I G E+ IG+
Sbjct: 768 LKVLDTAIQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIGK 815
>AT5G65110.1 | chr5:26009821-26012482 REVERSE LENGTH=693
Length = 692
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 146/359 (40%), Gaps = 52/359 (14%)
Query: 101 MEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNSGS 160
ME + S+G+ G +L ++ G+ + KY + + ++ G AM+E + GS
Sbjct: 133 MEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYTGCFAMTELHHGS 192
Query: 161 DVVSMKCKA--EKVDGGYVIN-----GNKMWCTNGP-SAQTLVVYAKTDIAA-GSKGIT- 210
+V ++ A + + +VI+ K W N + V+A+ + SKG++
Sbjct: 193 NVQGLQTTATFDPLKDEFVIDTPNDGAIKWWIGNAAVHGKFATVFARLILPTHDSKGVSD 252
Query: 211 ----AFII-------EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEG-- 257
AFI+ + +PG K+G+ G D L F + +P +N+L G
Sbjct: 253 MGVHAFIVPIRDMKTHQTLPGVEIQDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDV 312
Query: 258 --KGVYV-------MMSGLDLERLV-----LAAGPIGLMQACLDVAVPYVRQREQFGRP- 302
G Y G L LV LA +G+++ +A+ Y R+QFG P
Sbjct: 313 SRDGTYTSSLPTINKRFGATLGELVGGRVGLAYASVGVLKISATIAIRYSLLRQQFGPPK 372
Query: 303 -----IGEFQFIQGKLADMYTSLQSSR-SFVYSVARDCDNGKV-DRKDCAGVILFAAERA 355
I ++Q Q KL M S + + VY V + + K D + A V +A
Sbjct: 373 QPEVSILDYQSQQHKLMPMLASTYAYHFATVYLVEKYSEMKKTHDEQLVADVHALSAGLK 432
Query: 356 TQVALQAIQCL-------GGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFK 407
+ V + L GG+GY G L D +F+ G + + + +L K
Sbjct: 433 SYVTSYTAKALSVCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLK 491
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,228,453
Number of extensions: 330640
Number of successful extensions: 592
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 585
Number of HSP's successfully gapped: 4
Length of query: 409
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,337,553
Effective search space: 2567966324
Effective search space used: 2567966324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)