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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0159400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.66 (0.0445) R2 : 0.325
β1 : 0.912 (0.165) R2dD : 0.049 R2D : 0.0611
β2 : 1.02 (0.112) R2dC : 0.132 R2C : 0.166
β3 : 0.777 (0.126) R2dE : 0.071 R2E : 0.146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.212 (0.101) R2dN8 : 0.01 R2N8 : 0.0148
σ : 0.816
deviance : 306.69
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C
peak time of C : 20.7
E
wheather : temperature
threshold : 21.9
memory length : 696
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.9 0.819 4.65 1.07 1.03 0.786 0.602 0.497 0.242 20.6 21.9 691 -- --
304.64 0.813 4.66 0.936 1.02 0.768 0.745 -- 0.203 20.7 21.9 694 -- --
304.89 0.813 4.64 1.12 1.03 0.787 -- 0.728 0.259 20.7 21.9 689 -- --
306.69 0.816 4.66 0.912 1.02 0.777 -- -- 0.212 20.7 21.9 696 -- --
360.8 0.885 4.63 1.04 -- 1.08 -- 0.833 0.172 -- 21.8 704 -- --
330.31 0.852 4.61 1.19 1.18 -- 0.767 -- 0.453 20.7 -- -- -- --
332.23 0.854 4.61 1.16 1.18 -- -- -- 0.453 20.7 -- -- -- --
362.87 0.887 4.65 0.79 -- 1.05 -- -- 0.116 -- 21.81 704 -- --
326.08 0.841 4.69 -- 1.01 0.996 -- -- 0.0817 20.6 21.6 738 -- --
410.93 0.947 4.58 1.16 -- -- -- -- 0.443 -- -- -- -- --
367.82 0.897 4.64 -- 1.18 -- -- -- 0.323 20.8 -- -- -- --
377.94 0.905 4.68 -- -- 1.25 -- -- -0.00551 -- 21.61 733 -- --
446.43 0.986 4.61 -- -- -- -- -- 0.315 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 292.54 temperature 30 270 < th dose dependent rect. 7 3
12 296.75 temperature 25 720 < th dose dependent rect. 1 1
17 297.14 temperature 25 270 < th dose independent rect. 8 1
24 297.72 temperature 25 720 < th dose dependent rect. 23 4
39 299.01 temperature 25 270 < th dose independent rect. 7 3
46 299.25 temperature 10 720 > th dose dependent rect. 21 10
52 299.50 temperature 25 720 < th dose dependent rect. 22 12
88 301.00 temperature 20 720 < th dose independent rect. 23 4
99 301.23 temperature 25 720 < th dose dependent sin 9 NA
111 301.58 temperature 20 720 < th dose independent rect. 1 1
131 302.15 temperature 10 720 > th dose dependent rect. 19 14
145 302.44 temperature 20 720 > th dose independent rect. 21 10
184 303.03 temperature 20 720 < th dose independent rect. 22 11
194 303.19 temperature 20 720 < th dose independent rect. 22 9
204 303.38 temperature 10 720 > th dose dependent rect. 2 5
231 303.64 temperature 15 720 > th dose dependent rect. 3 2
280 304.34 temperature 25 270 < th dose dependent sin 3 NA
365 305.22 temperature 20 720 > th dose independent rect. 21 17
386 305.47 temperature 15 720 > th dose dependent sin 9 NA
402 305.62 temperature 20 720 < th dose independent sin 9 NA
431 305.81 temperature 20 720 > th dose independent sin 9 NA
548 306.65 temperature 20 270 > th dose independent rect. 2 14
670 307.44 temperature 25 720 < th dose dependent rect. 6 23
676 307.47 wind 9 90 > th dose dependent rect. 11 5
686 307.52 temperature 25 720 < th dose dependent no NA NA
695 307.58 temperature 20 720 > th dose independent rect. 2 5
723 307.73 radiation 1 720 > th dose dependent rect. 15 17
739 307.84 temperature 20 1440 > th dose independent rect. 22 1
783 308.03 temperature 10 270 > th dose dependent rect. 2 14
827 308.30 radiation 1 14400 > th dose independent rect. 6 1
837 308.38 radiation 1 14400 < th dose independent rect. 6 1
874 308.59 radiation 1 14400 < th dose dependent rect. 6 1
916 308.79 temperature 10 270 > th dose dependent sin 6 NA
934 308.89 temperature 20 720 > th dose independent rect. 12 19
967 309.06 temperature 20 1440 < th dose independent rect. 5 1