BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0115900 Os05g0115900|AK069009
(541 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0115900 Glycoside hydrolase, family 20 protein 1017 0.0
Os05g0415700 Glycoside hydrolase, family 20 protein 570 e-163
Os01g0891000 Glycoside hydrolase, family 20 protein 570 e-163
Os07g0575500 Glycoside hydrolase, family 20 protein 249 3e-66
Os03g0219400 Glycoside hydrolase, family 20 protein 241 1e-63
>Os05g0115900 Glycoside hydrolase, family 20 protein
Length = 541
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/508 (96%), Positives = 491/508 (96%)
Query: 34 GEPVYLWPLPRNFTSGSRTLLVDPDLXXXXXXXXXXXXXXXXXFERYRSLVFSPWAHAAR 93
GEPVYLWPLPRNFTSGSRTLLVDPDL FERYRSLVFSPWAHAAR
Sbjct: 34 GEPVYLWPLPRNFTSGSRTLLVDPDLALDGQGPGGAAAAVAEAFERYRSLVFSPWAHAAR 93
Query: 94 NASGGYDVGKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRG 153
NASGGYDVGKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRG
Sbjct: 94 NASGGYDVGKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRG 153
Query: 154 LETFSQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMSF 213
LETFSQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMSF
Sbjct: 154 LETFSQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMSF 213
Query: 214 SKLNVLHWHIIDEQSFPLEVPSYPKLWKGSYSKLERYTVEDARDIVSYARKRGIHVMAEI 273
SKLNVLHWHIIDEQSFPLEVPSYPKLWKGSYSKLERYTVEDARDIVSYARKRGIHVMAEI
Sbjct: 214 SKLNVLHWHIIDEQSFPLEVPSYPKLWKGSYSKLERYTVEDARDIVSYARKRGIHVMAEI 273
Query: 274 DVPGHAESWGKGYPKLWPSPKCREPLDVTSNFTFEVISGILSDMRKIFPFGLFHLGGDEV 333
DVPGHAESWGKGYPKLWPSPKCREPLDVTSNFTFEVISGILSDMRKIFPFGLFHLGGDEV
Sbjct: 274 DVPGHAESWGKGYPKLWPSPKCREPLDVTSNFTFEVISGILSDMRKIFPFGLFHLGGDEV 333
Query: 334 YTGCWNATPHVKQWLHERNMTTKDAYKYFVLKAQEIAINLNWIPVNWEETFNSFKENLNP 393
YTGCWNATPHVKQWLHERNMTTKDAYKYFVLKAQEIAINLNWIPVNWEETFNSFKENLNP
Sbjct: 334 YTGCWNATPHVKQWLHERNMTTKDAYKYFVLKAQEIAINLNWIPVNWEETFNSFKENLNP 393
Query: 394 LTVVHNWLGPGVCPKVVEKGFRCIMSNQGVWYLDHLDVPWQDFYTSEPLAGINNTAQQKL 453
LTVVHNWLGPGVCPKVVEKGFRCIMSNQGVWYLDHLDVPWQDFYTSEPLAGINNTAQQKL
Sbjct: 394 LTVVHNWLGPGVCPKVVEKGFRCIMSNQGVWYLDHLDVPWQDFYTSEPLAGINNTAQQKL 453
Query: 454 VLGGEVCMWGETADTSDVQQTIWPRAAAAAERMWSQLEAISAQDLETTVLARLHYFRCLL 513
VLGGEVCMWGETADTSDVQQTIWPRAAAAAERMWSQLEAISAQDLETTVLARLHYFRCLL
Sbjct: 454 VLGGEVCMWGETADTSDVQQTIWPRAAAAAERMWSQLEAISAQDLETTVLARLHYFRCLL 513
Query: 514 NHRGIAAAPVTNSYARRPPIGPGSCFIQ 541
NHRGIAAAPVTNSYARRPPIGPGSCFIQ
Sbjct: 514 NHRGIAAAPVTNSYARRPPIGPGSCFIQ 541
>Os05g0415700 Glycoside hydrolase, family 20 protein
Length = 531
Score = 570 bits (1470), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/509 (55%), Positives = 345/509 (67%), Gaps = 6/509 (1%)
Query: 34 GEPVYLWPLPRNFTSGSRTLLVDPDLXXXXXXXXXXXXXXXXXFERYRSLVFSPWAHAAR 93
G V +WP+P + G +TL V +L R + H
Sbjct: 28 GSVVEVWPMPATASKGGQTLHVSRELRMTAEGSKYADGEAILKDAFQRMVTLIELDHVIN 87
Query: 94 NASGGYDV-GKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIR 152
+S G + + VVV ++L GVDESY + V A G A IEA T++GA+
Sbjct: 88 GSSQGLPLLAGVNVVVHLPGDELNFGVDESYNLSVPATGSPIY----AQIEAQTVFGALH 143
Query: 153 GLETFSQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMS 212
LETFSQLC F++ ++ +E++ APW I D PRF +RGLL+DTSRH+LPV VIK VIDSM+
Sbjct: 144 ALETFSQLCNFDFTSRLIELQSAPWSITDMPRFPYRGLLIDTSRHYLPVPVIKSVIDSMT 203
Query: 213 FSKLNVLHWHIIDEQSFPLEVPSYPKLWKGSYSKLERYTVEDARDIVSYARKRGIHVMAE 272
+SKLNVLHWHI+DEQSFP+E+PSYPKLW G+YS ERYT++DA DIV YA +RG++V+AE
Sbjct: 204 YSKLNVLHWHIVDEQSFPIEIPSYPKLWNGAYSYSERYTMDDAIDIVQYAERRGVNVLAE 263
Query: 273 IDVPGHAESWGKGYPKLWPSPKCREPLDVTSNFTFEVISGILSDMRKIFPFGLFHLGGDE 332
IDVPGHA SWG GYP LWPS C+EPLDV+S TF+VI+GILSD K+F F HLGGDE
Sbjct: 264 IDVPGHALSWGVGYPSLWPSATCKEPLDVSSESTFQVINGILSDFSKVFKFKFVHLGGDE 323
Query: 333 VYTGCWNATPHVKQWLHERNMTTKDAYKYFVLKAQEIAINLNWIPVNWEETFNSFKENLN 392
V T CW +TP VK WL + M DAY+YFVL+AQ+IA + + +NWEETFN+F + L+
Sbjct: 324 VNTSCWTSTPRVKAWLAQHGMKESDAYRYFVLRAQKIAKSHGYEVINWEETFNNFGDKLD 383
Query: 393 PLTVVHNWLGPGVCPKVVEKGFRCIMSNQGVWYLDHLDVPWQDFYTSEPLAGINNTAQQK 452
TVVHNWLG GV KVV G RCI+SNQ WYLDHL+V W FY +EPL I N AQQK
Sbjct: 384 RRTVVHNWLGGGVAEKVVAAGLRCIVSNQDKWYLDHLEVTWDGFYMNEPLRNIKNPAQQK 443
Query: 453 LVLGGEVCMWGETADTSDVQQTIWPRAAAAAERMWSQLEAISAQDLETTVLARLHYFRCL 512
LVLGGEVCMW E D SD+QQTIWPRAAAAAER+W+ E +S + + ARL FRCL
Sbjct: 444 LVLGGEVCMWAEHIDASDIQQTIWPRAAAAAERLWTPFEKLSKEWEIAALSARLARFRCL 503
Query: 513 LNHRGIAAAPVTNSYARRPPIGPGSCFIQ 541
LNHRGIAA PVT Y R P P SC Q
Sbjct: 504 LNHRGIAAGPVTG-YGRSAPAEPSSCIKQ 531
>Os01g0891000 Glycoside hydrolase, family 20 protein
Length = 526
Score = 570 bits (1470), Expect = e-163, Method: Compositional matrix adjust.
Identities = 279/504 (55%), Positives = 349/504 (69%), Gaps = 8/504 (1%)
Query: 39 LWPLPRNFTSGSRTLLVDPDLXXXXXXXXXXXXXXXXXFERYRSLVFSPWAHAARNAS-G 97
LWP+P + + G++ L V D+ R + H A+
Sbjct: 30 LWPMPTSVSHGTQRLYVSKDITMSMEGSTYPDGKGILKDAFQRVVDLMKLNHVVDGANPS 89
Query: 98 GYDVGKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGLETF 157
+ + + VVV S +++L+ GVDESY + V AG + IEA T++GA+ L+TF
Sbjct: 90 SFVLTGVNVVVHSPEDELKFGVDESYNLSVPTAGYPLRV----QIEAQTVFGALHALQTF 145
Query: 158 SQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMSFSKLN 217
SQLC F++ +K +E+ APW I D PRF +RGLL+DTSRH+LPV VIK+VID+M++SKLN
Sbjct: 146 SQLCYFDFTSKLIELISAPWRISDTPRFPYRGLLIDTSRHYLPVTVIKKVIDTMAYSKLN 205
Query: 218 VLHWHIIDEQSFPLEVPSYPKLWKGSYSKLERYTVEDARDIVSYARKRGIHVMAEIDVPG 277
VLHWHI+D QSFP+E+PSYPKLW GSYS ERYT DA DIV YA RG++VMAEIDVPG
Sbjct: 206 VLHWHIVDAQSFPIEIPSYPKLWNGSYSFSERYTTSDAVDIVRYAENRGVNVMAEIDVPG 265
Query: 278 HAESWGKGYPKLWPSPKCREPLDVTSNFTFEVISGILSDMRKIFPFGLFHLGGDEVYTGC 337
HA SWG GYP LWPS C+EPLDV++NFTF VI GILSD K+F F HLGGDEV T C
Sbjct: 266 HALSWGVGYPSLWPSDSCKEPLDVSNNFTFGVIDGILSDFSKVFKFKFVHLGGDEVNTSC 325
Query: 338 WNATPHVKQWLHERNMTTKDAYKYFVLKAQEIAINLNWIPVNWEETFNSFKENLNPLTVV 397
W ATPH+K+WL + M DAY+YFVL++Q++AI+ + +NWEETFN+F + L+ TVV
Sbjct: 326 WTATPHIKKWLDDNQMNVSDAYRYFVLRSQKLAISHGYDVINWEETFNNFGDKLDRRTVV 385
Query: 398 HNWLGPGVCPKVVEKGFRCIMSNQGVWYLDHLDVPWQDFYTSEPLAGINNTAQQKLVLGG 457
HNWLG V PKVV G RCI+SNQ WYLDHLD W+ FYT+EPL GI++ QQ LV+GG
Sbjct: 386 HNWLGEDVAPKVVAAGLRCIVSNQDKWYLDHLDATWEGFYTNEPLKGIDDPEQQSLVIGG 445
Query: 458 EVCMWGETADTSDVQQTIWPRAAAAAERMWSQLEAISAQDLETTVLARLHYFRCLLNHRG 517
EVCMWGE D SD++QTIWPRAAAAAER+W+ +E I A+D V +RL FRCLLN RG
Sbjct: 446 EVCMWGEQIDASDIEQTIWPRAAAAAERLWTPIEKI-AED-PRLVTSRLARFRCLLNQRG 503
Query: 518 IAAAPVTNSYARRPPIGPGSCFIQ 541
+AAAPV Y R P PG C Q
Sbjct: 504 VAAAPVAG-YGRTAPYEPGPCVRQ 526
>Os07g0575500 Glycoside hydrolase, family 20 protein
Length = 706
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 170/486 (34%), Positives = 243/486 (50%), Gaps = 61/486 (12%)
Query: 100 DVGKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGLETFSQ 159
++G LT+ V+ L+ GVDESY + + AT+ A T +GA+RGLETFSQ
Sbjct: 109 ELGYLTLAVSDLHAPLQHGVDESYALEIL------PAGAAATVTAATAWGAMRGLETFSQ 162
Query: 160 LCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMSFSKLNVL 219
L + + V V A +ED P + RGL+LDT R + PV I + ID+M+ +K+NV
Sbjct: 163 LAWWCGRERAVLV-AAGVRVEDRPLYPHRGLMLDTGRTYFPVADILRTIDAMAANKMNVF 221
Query: 220 HWHIIDEQSFPLEVPSYPKLW-KGSYSKLERYTVEDARDIVSYARKRGIHVMAEIDVPGH 278
HWHI D QSFPLE+PS P L KGSY RYTV+D + IV +A RG+ V+ EID PGH
Sbjct: 222 HWHITDSQSFPLELPSEPALAEKGSYGDGMRYTVDDVKLIVDFAMNRGVRVVPEIDTPGH 281
Query: 279 AESWGKGYPKL--------------WPSPKCREP----LDVTSNFTFEVISGILSDMRKI 320
SW YP+L WPS EP L+ T++V+S +++D+ +
Sbjct: 282 TASWAGAYPELVSCAGEFWLPDASDWPSRLAAEPGAGQLNPLEPKTYQVMSNVINDVTSL 341
Query: 321 FPFGLFHLGGDEVYTGCWNATPHVKQWLHERNMTTKDAYKYFVLKAQEIAINLNWIPVNW 380
FP G +H G DEV GCWNA P ++++L R T + FV A + ++ N V W
Sbjct: 342 FPDGFYHAGADEVTPGCWNADPSIQRYL-ARGGTLSRLLEKFVGAAHPLIVSRNRTAVYW 400
Query: 381 EETFNSFKENLNP------LTVVHNWLGPGVCPK-VVEKGFRCIMSNQGVWYLD------ 427
E+ N+ T++ W G + +V G+R I+S+ +YLD
Sbjct: 401 EDVLLDQAVNVTASAIPPETTILQTWNNGGNNTRLIVRAGYRAIVSSASFYYLDCGHGDF 460
Query: 428 -----HLDVPWQDFYTSE----------------PLAGINNTAQQKLVLGGEVCMWGETA 466
D P D+ TS +AG + +LV+GGEV MW E
Sbjct: 461 AGNDSAYDDPRSDYGTSGGSWCGPYKTWQRVYDYDVAGGLTAEEARLVVGGEVAMWTEQV 520
Query: 467 DTSDVQQTIWPRAAAAAERMWSQLEAISAQDLETTVLARLHYFRCLLNHRGIAAAPVTNS 526
D + + +WPRA+A AE +WS + + RL +R + RG+ A P+
Sbjct: 521 DAAVLDGRVWPRASAMAEALWSGNRDATGRKRYAEATDRLTDWRHRMVGRGVRAEPIQPL 580
Query: 527 YARRPP 532
+ R P
Sbjct: 581 WCRNRP 586
>Os03g0219400 Glycoside hydrolase, family 20 protein
Length = 605
Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 178/503 (35%), Positives = 236/503 (46%), Gaps = 78/503 (15%)
Query: 101 VGKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGLETFSQL 160
V LT+ V+ D L VDESYT+ V G A I A T +GAIRGLETFSQL
Sbjct: 112 VRTLTLSVSDPDVPLGPAVDESYTLSVLPDSG------SADISAATPWGAIRGLETFSQL 165
Query: 161 CVFNYDTKNVEVRHAPWYIE--DEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMSFSKLNV 218
+ P IE D P F RG+LLDT+R+F PV I + +M+F+KLNV
Sbjct: 166 AWAGGGAASGGQPIVPSGIEISDRPHFTHRGILLDTARNFYPVRDILHTLRAMAFNKLNV 225
Query: 219 LHWHIIDEQSFPLEVPSYPKLWK-GSYSKLERYTVEDARDIVSYARKRGIHVMAEIDVPG 277
HWHI D QSFP+ +P+ P L GSYS RYT D R IVS+A GI V+ EID+PG
Sbjct: 226 FHWHITDAQSFPIVLPTVPNLANSGSYSPTMRYTENDVRHIVSFAASFGIRVIPEIDMPG 285
Query: 278 HAESWGKGYP-------KLWPSPKCR-----EP----LDVTSNFTFEVISGILSDMRKIF 321
H SW YP + W +P EP L+ + T+ V +L DM +F
Sbjct: 286 HTGSWAGAYPEIVTCANRFW-APHAEPALAAEPGTGQLNPLNPKTYRVAQDVLRDMVALF 344
Query: 322 PFGLFHLGGDEVYTGCWNATPHVKQWLHERNMTTKDAYKYFVLKAQE--IAINLNWIPVN 379
P H G DEV T CW P V+++L E T D + A +A LN V
Sbjct: 345 PDPYLHGGADEVNTACWEDDPVVRRFLAEGG--THDHLLELFINATRPFVAQELNRTVVY 402
Query: 380 WEETFNSFKENLNP------LTVVHNWL-GPGVCPKVVEKGFRCIMSNQGVWYLDH---- 428
WE+ K + P T++ W GP +VV G+R I+S+ +YLD
Sbjct: 403 WEDVLLGPKVTVGPTILPRETTILQTWNDGPENTKRVVAAGYRAIVSSASYYYLDCGHGG 462
Query: 429 --------------------LDVP-------------WQDFYTSEPLAGINNTAQQKLVL 455
+ P WQ Y + L G+ + Q LVL
Sbjct: 463 WVGNDSRYDKQEKEREGTPLFNDPGGTGGSWCAPFKTWQRVYDYDILHGLTDDEAQ-LVL 521
Query: 456 GGEVCMWGETADTSDVQQTIWPRAAAAAERMWSQLEAISAQDLETTVLARLHYFRCLLNH 515
GGEV +W E +D + + +WPRAAAAAE +WS + + + RL+ +R +
Sbjct: 522 GGEVALWSEQSDETVLDARLWPRAAAAAETLWSGNKGSNGKKRYANATDRLNDWRHRMVE 581
Query: 516 RGIAAAPVTNSYARRPPIGPGSC 538
RGI A P+ + + PG C
Sbjct: 582 RGIRAEPIQPLWCS---LHPGMC 601
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,927,106
Number of extensions: 804200
Number of successful extensions: 1569
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1552
Number of HSP's successfully gapped: 6
Length of query: 541
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 435
Effective length of database: 11,501,117
Effective search space: 5002985895
Effective search space used: 5002985895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)