Os03g0219400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 20 protein.
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Os03g0219400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 20 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.26 | 0.309 | 10.5 | 1.21 | 1.21 | 0.814 | -1.41 | 0.487 | 0.582 | 20.7 | 16.37 | 310 | -- | -- |
| 43.69 | 0.308 | 10.5 | 1.22 | 1.25 | 0.979 | -1.34 | -- | 0.595 | 20.2 | 14.3 | 338 | -- | -- |
| 45.73 | 0.315 | 10.5 | 1.18 | 1.88 | 0.811 | -- | 1.4 | 0.571 | 22.1 | 13.21 | 950 | -- | -- |
| 48.89 | 0.326 | 10.5 | 1.27 | 1.27 | 0.844 | -- | -- | 0.597 | 20.7 | 16.97 | 346 | -- | -- |
| 63.95 | 0.374 | 10.5 | 1.18 | -- | 1.14 | -- | -0.561 | 0.551 | -- | 8.823 | 3959 | -- | -- |
| 53.14 | 0.342 | 10.5 | 1.18 | 1.49 | -- | -0.742 | -- | 0.528 | 22.9 | -- | -- | -- | -- |
| 55.41 | 0.349 | 10.5 | 1.21 | 1.49 | -- | -- | -- | 0.53 | 22.9 | -- | -- | -- | -- |
| 60.84 | 0.365 | 10.5 | 1.28 | -- | 1.1 | -- | -- | 0.555 | -- | 1.214 | 16 | -- | -- |
| 87.79 | 0.436 | 10.5 | -- | 1.35 | 1.02 | -- | -- | 0.415 | 20.3 | 10 | 418 | -- | -- |
| 193.53 | 0.65 | 10.5 | 1.24 | -- | -- | -- | -- | 0.54 | -- | -- | -- | -- | -- |
| 94.09 | 0.454 | 10.5 | -- | 1.5 | -- | -- | -- | 0.395 | 23 | -- | -- | -- | -- |
| 102.06 | 0.472 | 10.5 | -- | -- | 1.14 | -- | -- | 0.437 | -- | 6.079 | 32 | -- | -- |
| 234.34 | 0.715 | 10.5 | -- | -- | -- | -- | -- | 0.402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.85 | temperature | 10 | 10 | > th | dose dependent | sin | 18 | NA |
| 21 | 38.87 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 32 | 39.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 39 | 39.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 13 |
| 50 | 40.00 | temperature | 25 | 30 | > th | dose independent | sin | 18 | NA |
| 58 | 40.07 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 10 |
| 60 | 40.12 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 13 |
| 68 | 40.23 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 11 |
| 83 | 40.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 14 |
| 93 | 40.55 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 11 |
| 108 | 40.61 | temperature | 25 | 30 | < th | dose independent | sin | 17 | NA |
| 168 | 41.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 175 | 41.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 176 | 41.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 5 |
| 194 | 41.31 | radiation | 1 | 90 | > th | dose independent | sin | 21 | NA |
| 210 | 41.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 232 | 41.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 7 |
| 292 | 41.73 | radiation | 1 | 90 | > th | dose independent | rect. | 9 | 21 |
| 344 | 41.91 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 9 |
| 375 | 41.98 | humidity | 90 | 10 | < th | dose dependent | sin | 19 | NA |
| 432 | 42.13 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 505 | 42.28 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 539 | 42.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 556 | 42.38 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 18 |
| 569 | 42.38 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 627 | 42.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 638 | 42.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 10 |
| 660 | 42.58 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 9 |
| 666 | 42.59 | humidity | 90 | 90 | < th | dose dependent | rect. | 9 | 9 |
| 674 | 42.60 | temperature | 25 | 720 | > th | dose dependent | sin | 0 | NA |
| 686 | 42.62 | radiation | 1 | 90 | < th | dose independent | sin | 20 | NA |
| 688 | 42.62 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 16 |
| 689 | 42.62 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 18 |
| 690 | 42.62 | radiation | 1 | 30 | < th | dose dependent | sin | 19 | NA |
| 706 | 42.64 | humidity | 50 | 10 | > th | dose dependent | sin | 18 | NA |
| 764 | 42.74 | humidity | 50 | 90 | > th | dose dependent | sin | 19 | NA |
| 784 | 42.78 | radiation | 1 | 270 | < th | dose independent | rect. | 9 | 9 |
| 791 | 42.79 | humidity | 90 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 858 | 42.90 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 7 |
| 914 | 43.00 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 11 |
| 919 | 43.00 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 942 | 43.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 945 | 43.04 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 7 |
| 999 | 43.09 | radiation | 20 | 270 | < th | dose dependent | rect. | 4 | 23 |