Os05g0415700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 20 protein.
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Os05g0415700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 20 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.72 | 0.614 | 3 | -0.154 | 0.0186 | 17.1 | 0.4 | 36.1 | 0.00103 | 9.71 | 2.437 | 112 | 4.15 | 1.03 |
| 299.5 | 0.806 | 2.95 | 0.419 | 0.189 | 14.1 | -1.43 | -- | 0.136 | 19.9 | 3.027 | 87 | 4.28 | 0.744 |
| 171.29 | 0.61 | 3.01 | -0.128 | 0.0284 | 17.5 | -- | 37.5 | 0.000556 | 6.55 | 2.763 | 109 | 4.16 | 1.04 |
| 260.26 | 0.751 | 2.91 | 0.00751 | 0.0132 | 14.2 | -- | -- | 0.358 | 18.9 | 3.147 | 43 | 4.35 | 0.946 |
| 171.33 | 0.61 | 3.01 | -0.127 | -- | 17.6 | -- | 37.5 | 0.00137 | -- | 2.749 | 109 | 4.16 | 1.04 |
| 196.84 | 0.658 | 2.96 | -0.379 | 0.0651 | -- | -0.454 | -- | -0.0302 | 3.47 | -- | -- | -- | -- |
| 197.3 | 0.658 | 2.96 | -0.371 | 0.0872 | -- | -- | -- | -0.0278 | 6.05 | -- | -- | -- | -- |
| 223.88 | 0.697 | 2.86 | -0.0596 | -- | 11.6 | -- | -- | 0.418 | -- | 3.115 | 43 | 4.37 | 0.96 |
| 230.37 | 0.707 | 2.9 | -- | 0.444 | 11.4 | -- | -- | 0.33 | 3.5 | 3.212 | 43 | 4.33 | 0.965 |
| 197.7 | 0.657 | 2.96 | -0.368 | -- | -- | -- | -- | -0.0258 | -- | -- | -- | -- | -- |
| 200.93 | 0.663 | 2.95 | -- | 0.0819 | -- | -- | -- | 0.0135 | 6.27 | -- | -- | -- | -- |
| 178.3 | 0.622 | 2.83 | -- | -- | 5.26 | -- | -- | 0.0958 | -- | 2.26 | 43 | 4.34 | 0.95 |
| 201.28 | 0.662 | 2.95 | -- | -- | -- | -- | -- | 0.015 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.96 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 11 | 171.96 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 21 | 176.66 | wind | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 25 | 181.11 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 27 | 182.16 | wind | 1.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 55 | 185.00 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 57 | 185.74 | wind | 1.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 60 | 185.81 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 61 | 186.21 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 65 | 186.72 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 69 | 186.93 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 70 | 186.95 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 72 | 187.05 | wind | 1.0 | 90 | < th | dose independent | rect. | 5 | 1 |
| 73 | 187.06 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 78 | 187.29 | wind | 1.0 | 90 | < th | dose independent | rect. | 3 | 7 |
| 81 | 187.41 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 82 | 187.42 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 84 | 187.43 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 11 | NA |
| 88 | 187.47 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 89 | 187.48 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 90 | 187.49 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 91 | 187.49 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 100 | 187.51 | wind | 9.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 101 | 187.51 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 111 | 187.55 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 114 | 187.59 | wind | 1.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 115 | 187.59 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 116 | 187.59 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 134 | 187.65 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 145 | 187.70 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 146 | 187.72 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 6 |
| 148 | 187.73 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 154 | 187.75 | wind | 7.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 155 | 187.75 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 172 | 187.78 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 185 | 187.81 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 228 | 187.94 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 229 | 187.94 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 235 | 187.97 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 240 | 187.99 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 244 | 187.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 256 | 188.06 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 260 | 188.11 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 268 | 188.13 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 276 | 188.14 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 5 |
| 292 | 188.14 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 293 | 188.14 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 297 | 188.15 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 395 | 188.26 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 416 | 188.28 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 452 | 188.28 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 511 | 188.37 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 512 | 188.37 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 12 | 18 |
| 515 | 188.38 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 532 | 188.44 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 545 | 188.44 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 561 | 188.45 | temperature | 25.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 565 | 188.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 568 | 188.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 8 |
| 571 | 188.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 583 | 188.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 596 | 188.54 | wind | 1.0 | 90 | < th | dose independent | rect. | 5 | 5 |
| 609 | 188.57 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 610 | 188.57 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 615 | 188.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 618 | 188.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 639 | 188.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 642 | 188.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 651 | 188.66 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 668 | 188.71 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 693 | 188.78 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 695 | 188.78 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 705 | 188.80 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 706 | 188.80 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 5 | 1 |
| 707 | 188.80 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 726 | 188.83 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 738 | 188.84 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 753 | 188.87 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 771 | 188.91 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 772 | 188.91 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 779 | 188.92 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 790 | 188.92 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 825 | 188.97 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 832 | 188.98 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 8 | NA |
| 868 | 189.08 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 878 | 189.08 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 879 | 189.08 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 880 | 189.09 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 896 | 189.11 | temperature | 30.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 926 | 189.16 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 940 | 189.18 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 944 | 189.18 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 957 | 189.21 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 974 | 189.21 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |