BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0415700 Os05g0415700|AK102449
(531 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65590.1 | chr1:24385996-24390989 FORWARD LENGTH=536 691 0.0
AT3G55260.1 | chr3:20489317-20492858 FORWARD LENGTH=542 530 e-150
AT1G05590.1 | chr1:1669871-1671686 FORWARD LENGTH=581 200 2e-51
>AT1G65590.1 | chr1:24385996-24390989 FORWARD LENGTH=536
Length = 535
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/506 (62%), Positives = 388/506 (76%), Gaps = 7/506 (1%)
Query: 31 VEVWPMPATASKGGQTLHVSRELRMTAEGSKYADGEAILKDAFQRMVTLIELDHVING-- 88
+ +WP+PA S GG+ +++S + ++ EGSKY D ILK+ F RM+ ++ L HVI+G
Sbjct: 32 LRIWPLPAQVSHGGRRMYLSGDFKLVTEGSKYGDASGILKEGFDRMLGVVRLSHVISGDR 91
Query: 89 ---SSQGLPLLAGVNVVVHLPGDELNFGVDESYNLSVPATGSPIYAQIEAQTVFGALHAL 145
+ G LL G++V++ DEL +G DESY L VP+ P YAQ+EA++V+GALH L
Sbjct: 92 NSSGTGGSALLQGLHVIISSSTDELEYGADESYKLVVPSPEKPSYAQLEAKSVYGALHGL 151
Query: 146 ETFSQLCNFDFTSRLIELQSAPWSITDMPRFPYRGLLIDTSRHYLPVPVIKSVIDSMTYS 205
+TFSQLC+F+ ++IE+ PW+I D PRF YRGLLIDTSRHYLP+PVIK+VIDSMTY+
Sbjct: 152 QTFSQLCHFNLKKKVIEILMTPWNIIDQPRFSYRGLLIDTSRHYLPLPVIKNVIDSMTYA 211
Query: 206 KLNVLHWHIVDEQSFPIEIPSYPKLWNGAYSYSERYTMDDAIDIVQYAERRGVNVLAEID 265
KLNVLHWHIVD QSFP+EIPSYPKLWNGAYS S+RYT +DA +IV YA RRG++VLAEID
Sbjct: 212 KLNVLHWHIVDTQSFPLEIPSYPKLWNGAYSSSQRYTFEDAAEIVNYARRRGIHVLAEID 271
Query: 266 VPGHALSWGVGYPSLWPSATCKEPLDVSSESTFQVINGILSDFSXXXXXXXXHLGGDEVN 325
VPGHALSWG GYP+LWPS C+EPLDVSS+ TF+VI+GILSDFS HLGGDEVN
Sbjct: 272 VPGHALSWGKGYPALWPSKNCQEPLDVSSDFTFKVIDGILSDFSKIFKFKFVHLGGDEVN 331
Query: 326 TSCWTSTPRVKAWLAQHGMKESDAYRYFVLRAQKIAKSHGYEVINWEETFNNFGDKLDRR 385
T+CW++TPR+ WL +H M E +AY+YFVLRAQKIA SHGYE+INWEETF NFG KL+R+
Sbjct: 332 TTCWSATPRIAQWLKKHRMSEKEAYQYFVLRAQKIALSHGYEIINWEETFINFGSKLNRK 391
Query: 386 TVVHNWLXXXXXXXXXXXXLRCIVSNQDKWYLDHLEVTWDGFYMNEPLRNIKNPAQQKLV 445
TVVHNWL LRCIVSNQ+ WYLDH++ W GFY NEP +NI + QQ LV
Sbjct: 392 TVVHNWLNTGLVENVTASGLRCIVSNQEFWYLDHIDAPWQGFYANEPFQNITDKKQQSLV 451
Query: 446 LGGEVCMWAEHIDASDIQQTIWPRAAAAAERLWTPFEKLSKEWEIAALSARLARFRCLLN 505
LGGEVCMW EHIDASDI+QTIWPRAAAAAERLWTP+ KL+K ++ RLA FRCLLN
Sbjct: 452 LGGEVCMWGEHIDASDIEQTIWPRAAAAAERLWTPYAKLAK--NPNNVTTRLAHFRCLLN 509
Query: 506 HRGIAAGPVTGYGRSAPAEPSSCIKQ 531
RG+AA P+ G GR P EP SC+ Q
Sbjct: 510 QRGVAAAPLVGGGRVVPFEPGSCLAQ 535
>AT3G55260.1 | chr3:20489317-20492858 FORWARD LENGTH=542
Length = 541
Score = 530 bits (1364), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/515 (51%), Positives = 331/515 (64%), Gaps = 22/515 (4%)
Query: 33 VWPMPATASKGGQTLHVSRELRMTAEGSKYADGEAILKDAFQRMVTLIELDHVINGSSQG 92
+WP+PA S G +TL V + + G+ G I++ AF R + +I + S +G
Sbjct: 33 LWPLPAEFSFGNETLSVDPTVTLIVAGN--GGGSLIIRAAFDRYMGII----FKHASGRG 86
Query: 93 LPL------------LAGVNVVVHLPGDELNFGVDESYNLSVPATGSPIY---AQIEAQT 137
L + + +VVH +EL GVDESY L V A IEA T
Sbjct: 87 SLLSRIRFLKMVEYDITSLKIVVHSDSEELQLGVDESYTLMVSKKNEQSIVGAATIEANT 146
Query: 138 VFGALHALETFSQLCNFDFTSRLIELQSAPWSITDMPRFPYRGLLIDTSRHYLPVPVIKS 197
V+GAL LETFSQLC FD+ ++ +++ APW I D PRF YRGLLIDTSRHYLP+ VIK
Sbjct: 147 VYGALRGLETFSQLCAFDYITKSVQIYKAPWYIQDKPRFGYRGLLIDTSRHYLPIDVIKQ 206
Query: 198 VIDSMTYSKLNVLHWHIVDEQSFPIEIPSYPKLWNGAYSYSERYTMDDAIDIVQYAERRG 257
+I+SM+++KLNVLHWHIVDEQSFP+E P+YP LW GAYS ERYT++DA +IV++A+ RG
Sbjct: 207 IIESMSFAKLNVLHWHIVDEQSFPLETPTYPNLWKGAYSRWERYTVEDASEIVRFAKMRG 266
Query: 258 VNVLAEIDVPGHALSWGVGYPSLWPSATCKEPLDVSSESTFQVINGILSDFSXXXXXXXX 317
+NV+AE+DVPGHA SWG GYP LWPS +C+EPLDV+ TF VI+GIL+D
Sbjct: 267 INVMAEVDVPGHAESWGTGYPDLWPSLSCREPLDVTKNFTFDVISGILADMRKIFPFELF 326
Query: 318 HLGGDEVNTSCWTSTPRVKAWLAQHGMKESDAYRYFVLRAQKIAKSHGYEVINWEETFNN 377
HLGGDEVNT CW +T VK WL DAY+YFVLRAQ+IA S + +NWEETF++
Sbjct: 327 HLGGDEVNTDCWKNTTHVKEWLQGRNFTTKDAYKYFVLRAQQIAISKNWTPVNWEETFSS 386
Query: 378 FGDKLDRRTVVHNWLXXXXXXXXXXXXLRCIVSNQDKWYLDHLEVTWDGFYMNEPLRNIK 437
FG LD RTV+ NWL RCI SNQ WYLDHL+V W+ Y EPL I+
Sbjct: 387 FGKDLDPRTVIQNWLVSDICQKAVAKGFRCIFSNQGYWYLDHLDVPWEEVYNTEPLNGIE 446
Query: 438 NPAQQKLVLGGEVCMWAEHIDASDIQQTIWPRAAAAAERLWTPFEKLSKEWEIAALSARL 497
+P+ QKLV+GGEVCMW E D S + QTIWPRAAAAAER+W+ E +SK RL
Sbjct: 447 DPSLQKLVIGGEVCMWGETADTSVVLQTIWPRAAAAAERMWSTREAVSKGNITLTALPRL 506
Query: 498 ARFRCLLNHRGIAAGPVTG-YGRSAPAEPSSCIKQ 531
FRCLLN+RG+ A PV Y R P P SC Q
Sbjct: 507 HYFRCLLNNRGVPAAPVDNFYARRPPLGPGSCYAQ 541
>AT1G05590.1 | chr1:1669871-1671686 FORWARD LENGTH=581
Length = 580
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/455 (32%), Positives = 207/455 (45%), Gaps = 56/455 (12%)
Query: 110 LNFGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQLCNFDFTSRLIELQSAPWS 169
L+ GVDESY LS+P GS A + A + +GA+ LETFSQ+ TS + L +
Sbjct: 110 LHHGVDESYKLSIP-IGS-FSAHLLAHSAWGAMRGLETFSQM--IWGTSPDLCLPVGIY- 164
Query: 170 ITDMPRFPYRGLLIDTSRHYLPVPVIKSVIDSMTYSKLNVLHWHIVDEQSFPIEIPSYPK 229
I D P F +RG+L+DTSR+Y V I I +M+ +KLNV HWHI D QSFP+ +PS P
Sbjct: 165 IQDSPLFGHRGVLLDTSRNYYGVDDIMRTIKAMSANKLNVFHWHITDSQSFPLVLPSEPS 224
Query: 230 L-WNGAYSYSERYTMDDAIDIVQYAERRGVNVLAEIDVPGHALSWGVGYPSL-------- 280
L G+ YT +D IVQY GV VL EID PGH SWG YP +
Sbjct: 225 LAAKGSLGPDMVYTPEDVSKIVQYGFEHGVRVLPEIDTPGHTGSWGEAYPEIVTCANMFW 284
Query: 281 WPSAT------CKEP----LDVSSESTFQVINGILSDFSXXXXXXXXHLGGDEVNTSCWT 330
WP+ EP L+ S T++V+ ++ D H GGDEV CW
Sbjct: 285 WPAGKSWEERLASEPGTGQLNPLSPKTYEVVKNVIQDIVNQFPESFFHGGGDEVIPGCWK 344
Query: 331 STPRVKAWLAQHGMKESDAYRYFVLRAQKIAKSHGYEVINWEETFNNFGDKLD------R 384
+ P + ++L+ G +Y I S V+ WE+ + K D
Sbjct: 345 TDPAINSFLSSGGTLSQLLEKYINSTLPYIV-SQNRTVVYWEDVLLDAQIKADPSVLPKE 403
Query: 385 RTVVHNWLXX-XXXXXXXXXXLRCIVSNQDKWYLDHLE---------------------- 421
T++ W R IVS+ + +YLD
Sbjct: 404 HTILQTWNNGPENTKRIVAAGYRVIVSSSEFYYLDCGHGGFLGNDSIYDQKESGGGSWCA 463
Query: 422 --VTWDGFYMNEPLRNIKNPAQQKLVLGGEVCMWAEHIDASDIQQTIWPRAAAAAERLWT 479
TW Y + + N ++KLVLGGEV +W+E D++ + +WPRA+A AE LW+
Sbjct: 464 PFKTWQSIYNYDIADGLLNEEERKLVLGGEVALWSEQADSTVLDSRLWPRASALAESLWS 523
Query: 480 PFEKLSKEWEIAALSARLARFRCLLNHRGIAAGPV 514
RL +R + RGI A P+
Sbjct: 524 GNRDERGVKRCGEAVDRLNLWRYRMVKRGIGAEPI 558
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,114,147
Number of extensions: 453961
Number of successful extensions: 800
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 792
Number of HSP's successfully gapped: 4
Length of query: 531
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 428
Effective length of database: 8,282,721
Effective search space: 3545004588
Effective search space used: 3545004588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)