Os07g0575500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 20 protein.
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Os07g0575500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 20 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237.47 | 0.724 | 8.88 | -2.59 | 2.79 | -2.48 | -0.958 | 1.67 | -1.58 | 8.64 | 4.95 | 1500 | 15.9 | -- |
| 240.82 | 0.723 | 8.87 | -2.47 | 2.82 | -2.6 | -1.12 | -- | -1.55 | 8.68 | 4.125 | 1494 | 16.2 | -- |
| 240.26 | 0.722 | 8.88 | -2.64 | 2.77 | -2.51 | -- | 1.99 | -1.58 | 8.6 | 5.209 | 1507 | 15.8 | -- |
| 244.8 | 0.729 | 8.87 | -2.5 | 2.84 | -2.62 | -- | -- | -1.55 | 8.63 | 4.136 | 1494 | 16.3 | -- |
| 306.38 | 0.815 | 8.91 | -2.49 | -- | -4.09 | -- | 1.23 | -1.32 | -- | 173.7 | 1142 | 18.8 | -- |
| 354.16 | 0.882 | 8.76 | -2.04 | 3 | -- | -1.32 | -- | -1.09 | 8.63 | -- | -- | -- | -- |
| 359.76 | 0.888 | 8.76 | -2.09 | 3.01 | -- | -- | -- | -1.09 | 8.57 | -- | -- | -- | -- |
| 309.92 | 0.82 | 8.9 | -2.27 | -- | -3.9 | -- | -- | -1.36 | -- | 189.3 | 1146 | 18.8 | -- |
| 378.83 | 0.907 | 8.76 | -- | 2.8 | -2.1 | -- | -- | -1.15 | 8.76 | 8.769 | 1512 | 15.3 | -- |
| 868.31 | 1.38 | 8.84 | -2.08 | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
| 474.63 | 1.02 | 8.71 | -- | 3 | -- | -- | -- | -0.861 | 8.63 | -- | -- | -- | -- |
| 444.96 | 0.982 | 8.83 | -- | -- | -3.67 | -- | -- | -1.04 | -- | 244.3 | 1154 | 18.9 | -- |
| 982.12 | 1.46 | 8.79 | -- | -- | -- | -- | -- | -0.836 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 252.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 6 | 252.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 14 | 255.55 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 27 | 257.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 35 | 257.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 78 | 259.65 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 86 | 260.01 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 90 | 260.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 92 | 260.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 95 | 260.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 97 | 260.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 98 | 260.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 110 | 260.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 116 | 260.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 118 | 260.72 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 141 | 260.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 655 | 270.74 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 783 | 271.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 20 |
| 815 | 271.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 819 | 271.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 826 | 271.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 830 | 271.68 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 985 | 272.64 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 993 | 272.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 10 |