BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0575500 Os07g0575500|Os07g0575500
(706 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05590.1 | chr1:1669871-1671686 FORWARD LENGTH=581 629 e-180
AT3G55260.1 | chr3:20489317-20492858 FORWARD LENGTH=542 233 3e-61
AT1G65590.1 | chr1:24385996-24390989 FORWARD LENGTH=536 231 7e-61
>AT1G05590.1 | chr1:1669871-1671686 FORWARD LENGTH=581
Length = 580
Score = 629 bits (1623), Expect = e-180, Method: Compositional matrix adjust.
Identities = 306/564 (54%), Positives = 371/564 (65%), Gaps = 19/564 (3%)
Query: 31 LPVNVWPKPTSMSWAEPHMAVRVSSSFHVVAPSGNXXXXXXXXXXXXXXXXXXXXXXVTP 90
LP+N+WPKP +SW + H A+ +S +F ++AP +
Sbjct: 29 LPINIWPKPRFLSWPQ-HKAIALSPNFTILAPEHQYLSASVTRYHN-----------LIR 76
Query: 91 AVNVTXXXXXXXXXXXXXELGYLTLAVSDLHAPLQHGVDESYALEILPXXXXXXXXXXXX 150
+ N + L L + V+D PL HGVDESY L I
Sbjct: 77 SENYSPLISYPVKLMKRYTLRNLVVTVTDFSLPLHHGVDESYKLSIPIGSFSAHLLAHSA 136
Query: 151 XXXMRGLETFSQLAWWCGRERAVLVAAGVRVEDRPLYPHRGLMLDTGRTYFPVADILRTI 210
MRGLETFSQ+ W G + + G+ ++D PL+ HRG++LDT R Y+ V DI+RTI
Sbjct: 137 WGAMRGLETFSQMIW--GTSPDLCLPVGIYIQDSPLFGHRGVLLDTSRNYYGVDDIMRTI 194
Query: 211 DAMAANKMNVFHWHITDSQSFPLELPSEPALAEKGSYGDGMRYTVDDVKLIVDFAMNRGV 270
AM+ANK+NVFHWHITDSQSFPL LPSEP+LA KGS G M YT +DV IV + GV
Sbjct: 195 KAMSANKLNVFHWHITDSQSFPLVLPSEPSLAAKGSLGPDMVYTPEDVSKIVQYGFEHGV 254
Query: 271 RVVPEIDTPGHTASWAGAYPELVSCAGEFWLPDASDWPSRLAAEPGAGQLNPLEPKTYQV 330
RV+PEIDTPGHT SW AYPE+V+CA FW P W RLA+EPG GQLNPL PKTY+V
Sbjct: 255 RVLPEIDTPGHTGSWGEAYPEIVTCANMFWWPAGKSWEERLASEPGTGQLNPLSPKTYEV 314
Query: 331 MSNVINDVTSLFPDGFYHAGADEVTPGCWNADPSIQRYLARGGTLSRLLEKFVGAAHPLI 390
+ NVI D+ + FP+ F+H G DEV PGCW DP+I +L+ GGTLS+LLEK++ + P I
Sbjct: 315 VKNVIQDIVNQFPESFFHGGGDEVIPGCWKTDPAINSFLSSGGTLSQLLEKYINSTLPYI 374
Query: 391 VSRNRTAVYWEDVLLDQAVNVTASAIPPETTILQTWNNGGNNTRLIVRAGYRAIVSSASF 450
VS+NRT VYWEDVLLD + S +P E TILQTWNNG NT+ IV AGYR IVSS+ F
Sbjct: 375 VSQNRTVVYWEDVLLDAQIKADPSVLPKEHTILQTWNNGPENTKRIVAAGYRVIVSSSEF 434
Query: 451 YYLDCGHGDFAGNDSAYDDPRSDYGTSGGSWCGPYKTWQRVYDYDVAGGLTAEEAR-LVV 509
YYLDCGHG F GNDS YD S GGSWC P+KTWQ +Y+YD+A GL EE R LV+
Sbjct: 435 YYLDCGHGGFLGNDSIYDQKES----GGGSWCAPFKTWQSIYNYDIADGLLNEEERKLVL 490
Query: 510 GGEVAMWTEQVDAAVLDGRVWPRASAMAEALWSGNRDATGRKRYAEATDRLTDWRHRMVG 569
GGEVA+W+EQ D+ VLD R+WPRASA+AE+LWSGNRD G KR EA DRL WR+RMV
Sbjct: 491 GGEVALWSEQADSTVLDSRLWPRASALAESLWSGNRDERGVKRCGEAVDRLNLWRYRMVK 550
Query: 570 RGVRAEPIQPLWCRNRPGMCNLVR 593
RG+ AEPIQPLWC PGMCN V
Sbjct: 551 RGIGAEPIQPLWCLKNPGMCNTVH 574
>AT3G55260.1 | chr3:20489317-20492858 FORWARD LENGTH=542
Length = 541
Score = 233 bits (594), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 156/482 (32%), Positives = 227/482 (47%), Gaps = 62/482 (12%)
Query: 113 LTLAVSDLHAPLQHGVDESYALEILPXXXXXXXXXXXXXX-----XMRGLETFSQLAWWC 167
L + V LQ GVDESY L + +RGLETFSQL +
Sbjct: 105 LKIVVHSDSEELQLGVDESYTLMVSKKNEQSIVGAATIEANTVYGALRGLETFSQLCAFD 164
Query: 168 GRERAV-LVAAGVRVEDRPLYPHRGLMLDTGRTYFPVADILRTIDAMAANKMNVFHWHIT 226
++V + A ++D+P + +RGL++DT R Y P+ I + I++M+ K+NV HWHI
Sbjct: 165 YITKSVQIYKAPWYIQDKPRFGYRGLLIDTSRHYLPIDVIKQIIESMSFAKLNVLHWHIV 224
Query: 227 DSQSFPLELPSEPALAEKGSYGDGMRYTVDDVKLIVDFAMNRGVRVVPEIDTPGHTASWA 286
D QSFPLE P+ P L KG+Y RYTV+D IV FA RG+ V+ E+D PGH SW
Sbjct: 225 DEQSFPLETPTYPNLW-KGAYSRWERYTVEDASEIVRFAKMRGINVMAEVDVPGHAESWG 283
Query: 287 GAYPELVSCAGEFWLPDASDWPSRLAAEPGAGQLNPLEPKTYQVMSNVINDVTSLFPDGF 346
YP+L WPS EP L+ + T+ V+S ++ D+ +FP
Sbjct: 284 TGYPDL--------------WPSLSCREP----LDVTKNFTFDVISGILADMRKIFPFEL 325
Query: 347 YHAGADEVTPGCWNADPSIQRYL-ARGGTLSRLLEKFVGAAHPLIVSRNRTAVYWEDVLL 405
+H G DEV CW ++ +L R T + FV A + +S+N T V WE+
Sbjct: 326 FHLGGDEVNTDCWKNTTHVKEWLQGRNFTTKDAYKYFVLRAQQIAISKNWTPVNWEETF- 384
Query: 406 DQAVNVTASAIPPETTILQTWNNGGNNTRLIVRAGYRAIVSSASFYYLDCGHGDFAGNDS 465
+ + P T++Q W + + + G+R I S+ ++YLD H D
Sbjct: 385 ----SSFGKDLDPR-TVIQNWLVSDICQKAVAK-GFRCIFSNQGYWYLD--HLDVP---- 432
Query: 466 AYDDPRSDYGTSGGSWCGPYKTWQRVYDYDVAGGLTAEE-ARLVVGGEVAMWTEQVDAAV 524
W+ VY+ + G+ +LV+GGEV MW E D +V
Sbjct: 433 ----------------------WEEVYNTEPLNGIEDPSLQKLVIGGEVCMWGETADTSV 470
Query: 525 LDGRVWPRASAMAEALWSGNRDATGRKRYAEATDRLTDWRHRMVGRGVRAEPIQPLWCRN 584
+ +WPRA+A AE +WS + A RL +R + RGV A P+ + R
Sbjct: 471 VLQTIWPRAAAAAERMWSTREAVSKGNITLTALPRLHYFRCLLNNRGVPAAPVDNFYARR 530
Query: 585 RP 586
P
Sbjct: 531 PP 532
>AT1G65590.1 | chr1:24385996-24390989 FORWARD LENGTH=536
Length = 535
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 228/475 (48%), Gaps = 71/475 (14%)
Query: 113 LTLAVSDLHAPLQHGVDESYALEILPXXXX---XXXXXXXXXXXMRGLETFSQLAWWCGR 169
L + +S L++G DESY L ++P + GL+TFSQL + +
Sbjct: 105 LHVIISSSTDELEYGADESYKL-VVPSPEKPSYAQLEAKSVYGALHGLQTFSQLCHFNLK 163
Query: 170 ERAV-LVAAGVRVEDRPLYPHRGLMLDTGRTYFPVADILRTIDAMAANKMNVFHWHITDS 228
++ + ++ + D+P + +RGL++DT R Y P+ I ID+M K+NV HWHI D+
Sbjct: 164 KKVIEILMTPWNIIDQPRFSYRGLLIDTSRHYLPLPVIKNVIDSMTYAKLNVLHWHIVDT 223
Query: 229 QSFPLELPSEPALAEKGSYGDGMRYTVDDVKLIVDFAMNRGVRVVPEIDTPGHTASWAGA 288
QSFPLE+PS P L G+Y RYT +D IV++A RG+ V+ EID PGH SW
Sbjct: 224 QSFPLEIPSYPKLW-NGAYSSSQRYTFEDAAEIVNYARRRGIHVLAEIDVPGHALSWGKG 282
Query: 289 YPELVSCAGEFWLPDASDWPSRLAAEPGAGQLNPLEPKTYQVMSNVINDVTSLFPDGFYH 348
YP L WPS+ EP L+ T++V+ +++D + +F F H
Sbjct: 283 YPAL--------------WPSKNCQEP----LDVSSDFTFKVIDGILSDFSKIFKFKFVH 324
Query: 349 AGADEVTPGCWNADPSIQRYLARGGTLSRLLEK-----FVGAAHPLIVSRNRTAVYWEDV 403
G DEV CW+A P I ++L + R+ EK FV A + +S + WE+
Sbjct: 325 LGGDEVNTTCWSATPRIAQWLKK----HRMSEKEAYQYFVLRAQKIALSHGYEIINWEET 380
Query: 404 LLDQAVNVTASAIPPETTILQTWNNGGNNTRLIVRAGYRAIVSSASFYYLDCGHGDFAGN 463
++ + T++ W N G + +G R IVS+ F+YLD
Sbjct: 381 FINFGSKLN------RKTVVHNWLNTG-LVENVTASGLRCIVSNQEFWYLD--------- 424
Query: 464 DSAYDDPRSDYGTSGGSWCGPYKTWQRVYDYDVAGGLT-AEEARLVVGGEVAMWTEQVDA 522
D P WQ Y + +T ++ LV+GGEV MW E +DA
Sbjct: 425 --HIDAP-----------------WQGFYANEPFQNITDKKQQSLVLGGEVCMWGEHIDA 465
Query: 523 AVLDGRVWPRASAMAEALWSGNRDATGRKRYAEATDRLTDWRHRMVGRGVRAEPI 577
+ ++ +WPRA+A AE LW+ A K T RL +R + RGV A P+
Sbjct: 466 SDIEQTIWPRAAAAAERLWTPY--AKLAKNPNNVTTRLAHFRCLLNQRGVAAAPL 518
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,611,579
Number of extensions: 544125
Number of successful extensions: 1068
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1052
Number of HSP's successfully gapped: 3
Length of query: 706
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 600
Effective length of database: 8,200,473
Effective search space: 4920283800
Effective search space used: 4920283800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)