BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0689500 Os04g0689500|AK060983
(348 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0689500 Conserved hypothetical protein 496 e-140
Os04g0430600 Conserved hypothetical protein 212 4e-55
Os02g0667600 Harpin-induced 1 domain containing protein 164 9e-41
Os06g0163300 Harpin-induced 1 domain containing protein 144 9e-35
Os01g0228500 Harpin-induced 1 domain containing protein 130 1e-30
>Os04g0689500 Conserved hypothetical protein
Length = 348
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/348 (73%), Positives = 257/348 (73%)
Query: 1 ISLASVSELHCQIKKKLEREQRSXXXXXXXXXXXXXXTDSEVTSLAXXXXXXXXXXXXXX 60
ISLASVSELHCQIKKKLEREQRS TDSEVTSLA
Sbjct: 1 ISLASVSELHCQIKKKLEREQRSKQIKKKKTRKMHAKTDSEVTSLAPSSPPRSPTSRGGR 60
Query: 61 XVYYVQSPSRDSHDGEKTATSVHSTPALSPMGXXXXXXXXXXXXXXXXGHPXXXXXXXXX 120
VYYVQSPSRDSHDGEKTATSVHSTPALSPMG GHP
Sbjct: 61 PVYYVQSPSRDSHDGEKTATSVHSTPALSPMGSPRHSVGRDSSSSRFSGHPKRKGDKSSS 120
Query: 121 XXXXAPAGKGWQEIGVIXXXXXXXXXXXXXXIPKRCKYXXXXXXXXXXXXXXXXXXXWGA 180
APAGKGWQEIGVI IPKRCKY WGA
Sbjct: 121 GRKGAPAGKGWQEIGVIEEEGLLDDEDERRGIPKRCKYFLIFVLGFVVLFSFFALVLWGA 180
Query: 181 SRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTADPF 240
SRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTADPF
Sbjct: 181 SRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTADPF 240
Query: 241 TLSYSQLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAPVPMI 300
TLSYSQLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAPVPMI
Sbjct: 241 TLSYSQLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAPVPMI 300
Query: 301 LRTTVHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPISLDKSCIYL 348
LRTTVHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPISLDKSCIYL
Sbjct: 301 LRTTVHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPISLDKSCIYL 348
>Os04g0430600 Conserved hypothetical protein
Length = 374
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 102/195 (52%), Positives = 137/195 (70%), Gaps = 1/195 (0%)
Query: 152 IPKRCKYXXXXXXXXXXXXXXXXXXXWGASRSQKPQIVIKSITFDNFIIQAGTDASLVPT 211
+P+R +Y WGAS +QKP + I SITF NF+IQAGTDASLVPT
Sbjct: 177 LPRRWRYALGFVGAFFALFFFFALILWGASHNQKPVVSINSITFHNFVIQAGTDASLVPT 236
Query: 212 DMATTNSTVKLTYRNTGTFFGIHVTADPFTLSYSQLTLASGDLNKFYQARSSRRTVSVGV 271
+++T N+TV++T+RNTG+FFG+HVTA+P TL Y QL +ASG++ FYQ+R S R V+V V
Sbjct: 237 ELSTVNATVRMTFRNTGSFFGVHVTAEPLTLYYYQLLMASGNVKYFYQSRKSSRHVAVAV 296
Query: 272 MGNKVPLYGGGPTLTAGKGSGS-MAPVPMILRTTVHSRAYVLGALVKPKFTRAIECKVLM 330
+G+KVPLYGGG L++ G+ APVP+ L SRA+VLG LVKPKF ++C V +
Sbjct: 297 VGDKVPLYGGGSGLSSTPVKGAPPAPVPLQLAVRFRSRAFVLGKLVKPKFLTNVQCSVRL 356
Query: 331 NPAKLNKPISLDKSC 345
+ AKL KP+SL+K+C
Sbjct: 357 DVAKLGKPVSLNKAC 371
>Os02g0667600 Harpin-induced 1 domain containing protein
Length = 337
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 114/173 (65%), Gaps = 3/173 (1%)
Query: 178 WGASRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTA 237
WGAS+S KP +V+KS+ F+ + IQ GTD + VPT M + N+TV+L +RN GTFF +HVT+
Sbjct: 161 WGASKSYKPHVVVKSVVFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTS 220
Query: 238 DPFTLSYSQLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAP- 296
PF L Y LT+A+G + +FYQ R S R V+V V+G +VPLYG G L + +G + P
Sbjct: 221 TPFHLFYDDLTVATGHMAEFYQPRRSGRVVTVSVVGKQVPLYGAGAELHSKPNNGRLGPA 280
Query: 297 -VPMILRTTVHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPI-SLDKSCIY 347
VP+ + + +RA++LG LV+ KF R + C++ + A L KP+ + C Y
Sbjct: 281 VVPVRMAFVLRARAHILGLLVRSKFYRRVLCRLDVREASLGKPVHGVAADCEY 333
>Os06g0163300 Harpin-induced 1 domain containing protein
Length = 322
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 131/286 (45%), Gaps = 11/286 (3%)
Query: 63 YYVQSPSRDSHDG-----EKTATSVHSTPALSPMGXXXXXXXXXXXXXXXXGHPXXXXXX 117
YYVQSPSR+SHDG AT V+++P SP G
Sbjct: 35 YYVQSPSRESHDGGYKSSSMQATPVYNSPNESPSHPSYGRHSRSSSVSRFSG-TLRDGSR 93
Query: 118 XXXXXXXAPAGKGWQEIGVIXXXXXXXXXXXXXXIPKRCKYXXXXXXXXXXXXXXXXXXX 177
A KGW E VI + +RC+
Sbjct: 94 KAGGERKALNDKGWPECNVIEEEGPYEDLAGDTGLSRRCQ-IVLGFLCFVLLFTVFCLII 152
Query: 178 WGASRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTA 237
WGA+R +P +V+KS+T D+F GTD S VPT + T N ++ + N + FGIHVT
Sbjct: 153 WGAARPYEPDVVVKSLTMDDFYAGEGTDHSGVPTKLVTLNCSLHIAVYNPASMFGIHVTT 212
Query: 238 DPFTLSYSQLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAPV 297
P L YS++++ G + ++YQ R S R V+ V GNKVPLYG G L G+ V
Sbjct: 213 GPIRLLYSEISIGVGQVRRYYQPRKSHRLVTAVVHGNKVPLYGAGGGLMLSSSGGA---V 269
Query: 298 PMILRTTVHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPISLDK 343
P+ L + SR YV+G LV+ + C ++++ AK KPI K
Sbjct: 270 PLTLDFDLTSRGYVIGKLVRVTHKVHVTCPIVVD-AKKTKPIKFSK 314
>Os01g0228500 Harpin-induced 1 domain containing protein
Length = 330
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 142/331 (42%), Gaps = 28/331 (8%)
Query: 38 TDSEVTSLAXXXXXXXXXXXXXXXVYYVQ-SPSRDSHD--GEKT----ATSVHSTPAL-- 88
++S++TSLA YYVQ SPSRDSHD G+K+ AT V++ L
Sbjct: 6 SESDMTSLATSSPSRSPKAAAA--AYYVQISPSRDSHDDDGDKSPSTQATPVYNNSPLDS 63
Query: 89 -----SPMGXXXXXXXXXXXXXXXXGHPXXXXXXXXXXXXXAPAGKGWQEIGVIXXXXXX 143
S G A KGW+++ I
Sbjct: 64 PSHHSSSFGRHSRVSSASRFSGNLRSASGRSRLGGGGGRRRLGA-KGWRDVDAIIDEEEE 122
Query: 144 XXXXXXXXI------PKRCKYXXXXXXXXXXXXXXXXXXXWGASRSQKPQIVIKSITFDN 197
P RC WG +R KP +++KS+T N
Sbjct: 123 GAYDEFDDDDDGGYEPSRCCVLAFRFSLLALAFTLVCLIVWGIARHYKPGVLVKSLTVGN 182
Query: 198 FIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTADPFTLSYSQLTLASGDLNKF 257
F G D + VPT + T N ++++ N T FGIHV++ + +SQ+ +A+G L KF
Sbjct: 183 FYAGEGIDRTGVPTKLVTMNCSLQINVHNPSTMFGIHVSSTSIQILFSQIAIANGQLEKF 242
Query: 258 YQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAPVPMILRTTVHSRAYVLGALVK 317
YQ RSS S V G K+PLYG G T G+ VP+ L V +R YV+G LV+
Sbjct: 243 YQPRSSHHVASAIVHGEKIPLYGAGETFALSNAGGA---VPLTLDLVVRARGYVIGKLVR 299
Query: 318 PKFTRAIECKVLMNPAKLNKPISLDKS-CIY 347
T+ ++C V+++ +KPI +S C Y
Sbjct: 300 VTHTKRVKCPVVIDSGS-SKPIRFIQSACSY 329
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,258,681
Number of extensions: 281313
Number of successful extensions: 604
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 5
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)