BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0685200 Os04g0685200|AK060191
(330 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0685200 Peptidase A1, pepsin family protein 494 e-140
Os03g0281400 148 5e-36
Os04g0535200 Peptidase A1, pepsin family protein 111 7e-25
Os04g0448300 Peptidase A1, pepsin family protein 106 3e-23
Os03g0317500 99 6e-21
Os03g0317900 91 1e-18
Os02g0314600 Peptidase A1, pepsin family protein 87 1e-17
Os07g0533800 Peptidase A1, pepsin family protein 83 3e-16
Os03g0318100 82 8e-16
>Os04g0685200 Peptidase A1, pepsin family protein
Length = 330
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/330 (77%), Positives = 256/330 (77%)
Query: 1 PDHLSDCRAASSCPGANCTPRNANANNVCPPYLVVYGSGSTAGLLISDTLRTPGRAVRNF 60
PDHLSDCRAASSCPGANCTPRNANANNVCPPYLVVYGSGSTAGLLISDTLRTPGRAVRNF
Sbjct: 1 PDHLSDCRAASSCPGANCTPRNANANNVCPPYLVVYGSGSTAGLLISDTLRTPGRAVRNF 60
Query: 61 VIGCSLASVHQPPSGLAGFGRGAPSVPSQLGLTKFSYCLLSRRFDDNAAVSXXXXXXXXX 120
VIGCSLASVHQPPSGLAGFGRGAPSVPSQLGLTKFSYCLLSRRFDDNAAVS
Sbjct: 61 VIGCSLASVHQPPSGLAGFGRGAPSVPSQLGLTKFSYCLLSRRFDDNAAVSGELILGGAG 120
Query: 121 XXXXXXXMQXXXXXXXXXXXXXXXVYYYLALTAITVGGKSVQLPERAFVXXXXXXXXIVD 180
MQ VYYYLALTAITVGGKSVQLPERAFV IVD
Sbjct: 121 GKDGGVGMQYAPLARSASARPPYSVYYYLALTAITVGGKSVQLPERAFVAGGAGGGAIVD 180
Query: 181 SGTTFSYFDRTVFEPXXXXXXXXXGGRYSRSKVVEEGLGLSPCFAMPPGTKTMELPEMSL 240
SGTTFSYFDRTVFEP GGRYSRSKVVEEGLGLSPCFAMPPGTKTMELPEMSL
Sbjct: 181 SGTTFSYFDRTVFEPVAAAVVAAVGGRYSRSKVVEEGLGLSPCFAMPPGTKTMELPEMSL 240
Query: 241 HFKGGSVMNLPVENYFVVXXXXXXXXXXXXXXXICLAVVSDVPTXXXXXXXXXXXPAIIL 300
HFKGGSVMNLPVENYFVV ICLAVVSDVPT PAIIL
Sbjct: 241 HFKGGSVMNLPVENYFVVAGPAPSGGAPAMAEAICLAVVSDVPTSSGGAGVSSGGPAIIL 300
Query: 301 GSFQQQNYYIEYDLEKERLGFRRQQCASSS 330
GSFQQQNYYIEYDLEKERLGFRRQQCASSS
Sbjct: 301 GSFQQQNYYIEYDLEKERLGFRRQQCASSS 330
>Os03g0281400
Length = 161
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 87/136 (63%)
Query: 34 VVYGSGSTAGLLISDTLRTPGRAVRNFVIGCSLASVHQPPSGLAGFGRGAPSVPSQLGLT 93
VVY SGST LLISDTLRTPGR +RNFV+GCSL SV+Q SGL GF G PSVPSQLGLT
Sbjct: 10 VVYSSGSTTRLLISDTLRTPGRTIRNFVVGCSLMSVYQQSSGLTGFSCGVPSVPSQLGLT 69
Query: 94 KFSYCLLSRRFDDNAAVSXXXXXXXXXXXXXXXXMQXXXXXXXXXXXXXXXVYYYLALTA 153
KF Y LL+RRFDDNA S MQ VYYYLAL A
Sbjct: 70 KFFYFLLARRFDDNATASDELILGGAGGKDDNVRMQYIPLARSASTRPLCSVYYYLALIA 129
Query: 154 ITVGGKSVQLPERAFV 169
ITV KSVQLP+RAFV
Sbjct: 130 ITVRRKSVQLPKRAFV 145
>Os04g0535200 Peptidase A1, pepsin family protein
Length = 492
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 146/329 (44%), Gaps = 19/329 (5%)
Query: 5 SDCRAASSCPGANCTPRNANANNVCPPYLVVYGSGS-TAGLLISDTLRTPGRAVRNFVIG 63
SD AA+ CP + ++ A++ CPP YG GS A L AV NF
Sbjct: 166 SDLCAAARCP-LDAIETDSCASHACPPLYYAYGDGSLVANLRRGRVGLAASMAVENFTFA 224
Query: 64 CSLASVHQPPSGLAGFGRGAPSVPSQLGLT---KFSYCLLSRRFDDNAAVSXXXXXXXXX 120
C+ ++ +P G+AGFGRG S+P+QL + +FSYCL++ F + +
Sbjct: 225 CAHTALAEP-VGVAGFGRGPLSLPAQLAPSLSGRFSYCLVAHSFRADRLIRSSPLILGRS 283
Query: 121 XXXXXXXMQXXXXXXXXXXXXXXXVYYY-LALTAITVGGKSVQL-PERAFVXXXXXXXXI 178
Y+Y +AL A++VGGK +Q PE V +
Sbjct: 284 TDAAAIGASETDFVYTPLLHNPKHPYFYSVALEAVSVGGKRIQAQPELGDVDRDGNGGMV 343
Query: 179 VDSGTTFSYFDRTVF-EPXXXXXXXXXGGRYSRSKVVEEGLGLSPCFAMPPGTKTMELPE 237
VDSGTTF+ F R++R++ E GL+PC+ P + +P
Sbjct: 344 VDSGTTFTMLPSDTFARVADEFARAMAAARFTRAEGAEAQTGLAPCYHYSPSDRA--VPP 401
Query: 238 MSLHFKGGSVMNLPVENYFVVXXXXXXXXXXXXXXXICLAVVSDVPTXXXXXXXXXXXPA 297
++LHF+G + + LP NYF+ CL +++ PA
Sbjct: 402 VALHFRGNATVALPRRNYFMGFKSEEGRSVG------CLMLMN--VGGNNDDGEDGGGPA 453
Query: 298 IILGSFQQQNYYIEYDLEKERLGFRRQQC 326
LG+FQQQ + + YD++ R+GF R++C
Sbjct: 454 GTLGNFQQQGFEVVYDVDAGRVGFARRRC 482
>Os04g0448300 Peptidase A1, pepsin family protein
Length = 454
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 124/301 (41%), Gaps = 36/301 (11%)
Query: 32 YLVVYG-SGSTAGLLISDTLRTPGRAVRNFVIGC---SLASVHQPPSGLAGFGRGAPSVP 87
Y YG S ST G+L ++T + V GC + +GL G GRG S+
Sbjct: 181 YTYTYGDSSSTQGVLATETFTLAKSKLPGVVFGCGDTNEGDGFSQGAGLVGLGRGPLSLV 240
Query: 88 SQLGLTKFSYCLLSRRFDDNAAVSXXXXXXXXXXXXXXXXMQXXXXXXXXXXXXXXXVYY 147
SQLGL KFSYCL S +N+ + +Q +Y
Sbjct: 241 SQLGLDKFSYCLTSLDDTNNSPLLLGSLAGISEASAAASSVQTTPLIKNPSQPS----FY 296
Query: 148 YLALTAITVGGKSVQLPERAF-VXXXXXXXXIVDSGTTFSYFDRTVFEPXXXXXXXXXGG 206
Y++L AITVG + LP AF V IVDSGT+ +Y + +
Sbjct: 297 YVSLKAITVGSTRISLPSSAFAVQDDGTGGVIVDSGTSITYLEVQGYR----ALKKAFAA 352
Query: 207 RYSRSKVVEEGLGLSPCFAMP-PGTKTMELPEMSLHFKGGSVMNLPVENYFVVXXXXXXX 265
+ + G+GL CF P G +E+P + HF GG+ ++LP ENY V+
Sbjct: 353 QMALPAADGSGVGLDLCFRAPAKGVDQVEVPRLVFHFDGGADLDLPAENYMVL------- 405
Query: 266 XXXXXXXXICLAVVSDVPTXXXXXXXXXXXPAIILGSFQQQNYYIEYDLEKERLGFRRQQ 325
+CL V+ I+G+FQQQN+ YD+ + L F Q
Sbjct: 406 --DGGSGALCLTVMGSRGLS-------------IIGNFQQQNFQFVYDVGHDTLSFAPVQ 450
Query: 326 C 326
C
Sbjct: 451 C 451
>Os03g0317500
Length = 469
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 121/300 (40%), Gaps = 37/300 (12%)
Query: 32 YLVVYGSGS-TAGLLISDTLR-TPGRAVRNFVIGCSLASV---HQPPSGLAGFGRGAPSV 86
Y YG S T G L +T+ G +V V GC L + +G+AGFGRG S+
Sbjct: 199 YSYSYGDKSATIGFLDVETVSFVAGASVPGVVFGCGLNNTGIFRSNETGIAGFGRGPLSL 258
Query: 87 PSQLGLTKFSYCLLSRRFDDNAAVSXXXXXXXXXXXXXXXXMQXXXXXXXXXXXXXXXVY 146
PSQL + FS+C + + V + +
Sbjct: 259 PSQLKVGNFSHCFTAVSGRKPSTV------LFDLPADLYKNGRGTVQTTPLIKNPAHPTF 312
Query: 147 YYLALTAITVGGKSVQLPERAFVXXXXXXXXIVDSGTTFSYFDRTVFEPXXXXXXXXXGG 206
YYL+L ITVG + +PE AF I+DSGT F+ V+
Sbjct: 313 YYLSLKGITVGSTRLPVPESAFALKNGTGGTIIDSGTAFTSLPPRVYR----LVHDEFAA 368
Query: 207 RYSRSKVVEEGLGLSPCFAMPPGTKTMELPEMSLHFKGGSVMNLPVENYFVVXXXXXXXX 266
V G CF+ PP K +P++ LHF+G + M+LP ENY
Sbjct: 369 HVKLPVVPSNETGPLLCFSAPPLGKAPHVPKLVLHFEGAT-MHLPRENYVF-------EA 420
Query: 267 XXXXXXXICLAVVSDVPTXXXXXXXXXXXPAIILGSFQQQNYYIEYDLEKERLGFRRQQC 326
ICLA++ T I+G+FQQQN ++ YDL+ +L F R +C
Sbjct: 421 KDGGNCSICLAIIEGEMT--------------IIGNFQQQNMHVLYDLKNSKLSFVRAKC 466
>Os03g0317900
Length = 411
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 123/327 (37%), Gaps = 35/327 (10%)
Query: 6 DCRAASSCPGANCTPRNANANNVCPPYLVVYGSGS-TAGLLISD--TLRTPGRAVRNFVI 62
D P A+C N C Y YG S T G L D T G +V
Sbjct: 111 DSTLCQGLPVASCGSPKFWPNQTCV-YTYSYGDKSVTTGFLEVDKFTFVGAGASVPGVAF 169
Query: 63 GCSLAS---VHQPPSGLAGFGRGAPSVPSQLGLTKFSYCLLSRRFDDNAAVSXXXXXXXX 119
GC L + +G+AGFGRG S+PSQL + FS+C + A S
Sbjct: 170 GCGLFNNGVFKSNETGIAGFGRGPLSLPSQLKVGNFSHCFTTIT---GAIPSTVLLDLPA 226
Query: 120 XXXXXXXXMQXXXXXXXXXXXXXXXVYYYLALTAITVGGKSVQLPERAFVXXXXXXXXIV 179
YYL+L ITVG + +PE AF I+
Sbjct: 227 DLFSNGQGAVQTTPLIQYAKNEANPTLYYLSLKGITVGSTRLPVPESAFALTNGTGGTII 286
Query: 180 DSGTTFSYFDRTVFEPXXXXXXXXXGGRYSRSKVVEEGLGLSPCFAMPPGTKTMELPEMS 239
DSGT+ + V++ + V G CF+ P K ++P++
Sbjct: 287 DSGTSITSLPPQVYQ----VVRDEFAAQIKLPVVPGNATGHYTCFSAPSQAKP-DVPKLV 341
Query: 240 LHFKGGSVMNLPVENYFVVXXXXXXXXXXXXXXXICLAVVSDVPTXXXXXXXXXXXPAII 299
LHF+G + M+LP ENY ICLA+ T I
Sbjct: 342 LHFEGAT-MDLPRENYVF------EVPDDAGNSIICLAINKGDETT-------------I 381
Query: 300 LGSFQQQNYYIEYDLEKERLGFRRQQC 326
+G+FQQQN ++ YDL+ L F QC
Sbjct: 382 IGNFQQQNMHVLYDLQNNMLSFVAAQC 408
>Os02g0314600 Peptidase A1, pepsin family protein
Length = 514
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 25/183 (13%)
Query: 146 YYYLALTAITVGGKSVQL-PERAFVXXXXXXXXIVDSGTTFSYFDRTVFEPXXXXXXXXX 204
+YY+ L + VGG+ + + P V I+DSGTT SYF +E
Sbjct: 354 FYYVQLKGVLVGGEKLNISPSTWDVGKDGSGGTIIDSGTTLSYFAEPAYEVIRRAFVERM 413
Query: 205 GGRYSRSKVVEEGLGLSPCFAMPPGTKTMELPEMSLHFKGGSVMNLPVENYFVVXXXXXX 264
Y +V + LSPC+ + G + +E+PE SL F G+V + P ENYFV
Sbjct: 414 DKAY---PLVADFPVLSPCYNVS-GVERVEVPEFSLLFADGAVWDFPAENYFV------- 462
Query: 265 XXXXXXXXXICLAVVSDVPTXXXXXXXXXXXPAIILGSFQQQNYYIEYDLEKERLGFRRQ 324
+CLAV+ + I+G+FQQQN+++ YDL+ RLGF +
Sbjct: 463 --RLDPDGIMCLAVLGTPRSAMS-----------IIGNFQQQNFHVLYDLQNNRLGFAPR 509
Query: 325 QCA 327
+CA
Sbjct: 510 RCA 512
>Os07g0533800 Peptidase A1, pepsin family protein
Length = 458
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 129/312 (41%), Gaps = 48/312 (15%)
Query: 32 YLVVYGSGSTAGLLISDTL---RTPGRAVR--NFVIGCSLASVHQP--PSGLAGFGRGAP 84
Y YG+G T+GL S+T +P VR GCS AS +GL G GRG
Sbjct: 179 YNQTYGTGWTSGLQGSETFTFGSSPADQVRVPGIAFGCSNASSDDWNGSAGLVGLGRGGL 238
Query: 85 SVPSQLGLTKFSYCLLSRRFDDNAAVSXXXXXXXXXXXXXXXXMQXXXXXXXXXXXXXXX 144
S+ SQL FSYCL F D + S
Sbjct: 239 SLVSQLAAGMFSYCLTP--FQDTKSKSTLLLGPAAAAAALNGTGVRSTPFVPSPSKPPMS 296
Query: 145 VYYYLALTAITVGGKSVQLPERAF-VXXXXXXXXIVDSGTTFSYFDRTVFEPXXXXXXXX 203
YYYL LT I+VG ++ +P AF + I+DSGTT + ++
Sbjct: 297 TYYYLNLTGISVGPAALPIPPGAFALRADGTGGLIIDSGTTITSLVDAAYKRVRAAV--- 353
Query: 204 XGGRYSRSKV---VEEG---LGLSPCFAMPPGTKT-MELPEMSLHFKGGSVMNLPVENYF 256
RS V V +G GL CFA+P + LP M+LHF GG+ M LPVENY
Sbjct: 354 ------RSLVKLPVTDGSNATGLDLCFALPSSSAPPATLPSMTLHFGGGADMVLPVENYM 407
Query: 257 VVXXXXXXXXXXXXXXXICLAVVSDVPTXXXXXXXXXXXPAIILGSFQQQNYYIEYDLEK 316
++ CLA+ S LG++QQQN +I YD++K
Sbjct: 408 IL-----------DGGMWCLAMRSQTDGELS-----------TLGNYQQQNLHILYDVQK 445
Query: 317 ERLGFRRQQCAS 328
E L F +C++
Sbjct: 446 ETLSFAPAKCST 457
>Os03g0318100
Length = 367
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 120/312 (38%), Gaps = 37/312 (11%)
Query: 16 ANCTPRNANANNVCPPYLVVYGSGS-TAGLLISDTLR-TPGRAVRNFVIGCSLAS---VH 70
A+C N C Y Y S T GL+ D G +V GC L +
Sbjct: 86 ASCGNTKFWPNQTCV-YTYYYNDKSVTTGLIEVDKFTFGAGASVPGVAFGCGLFNNGVFK 144
Query: 71 QPPSGLAGFGRGAPSVPSQLGLTKFSYCLLSRRFDDNAAVSXXXXXXXXXXXXXXXXMQX 130
+G+AGFGRG S+PSQL + FS+C + + V +
Sbjct: 145 SNETGIAGFGRGPLSLPSQLKVGNFSHCFTAVNGLKQSTV------LLDLPADLYKNGRG 198
Query: 131 XXXXXXXXXXXXXXVYYYLALTAITVGGKSVQLPERAFVXXXXXXXXIVDSGTTFSYFDR 190
+YYL+L ITVG + +PE AF I+DSGT+ +
Sbjct: 199 AVQSTPLIQNSANPTFYYLSLKGITVGSTRLPVPESAFALTNGTGGTIIDSGTSITSLPP 258
Query: 191 TVFEPXXXXXXXXXGGRYSRSKVVEEGLGLSPCFAMPPGTKTMELPEMSLHFKGGSVMNL 250
V++ + V G CF+ P K ++P++ LHF+G + M+L
Sbjct: 259 QVYQ----VVRDEFAAQIKLPVVPGNATGPYTCFSAPSQAKP-DVPKLVLHFEGAT-MDL 312
Query: 251 PVENYFVVXXXXXXXXXXXXXXXICLAVVSDVPTXXXXXXXXXXXPAIILGSFQQQNYYI 310
P ENY ICLA+ T I+G+FQQQN ++
Sbjct: 313 PRENYVF------EVPDDAGNSIICLAINKGDETT-------------IIGNFQQQNMHV 353
Query: 311 EYDLEKERLGFR 322
YDL+ G R
Sbjct: 354 LYDLQNMHRGPR 365
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,402,215
Number of extensions: 332011
Number of successful extensions: 864
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 9
Length of query: 330
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 229
Effective length of database: 11,762,187
Effective search space: 2693540823
Effective search space used: 2693540823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)