Os02g0314600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os02g0314600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.43 | 0.563 | 7.99 | 0.207 | 0.757 | 1.08 | -0.868 | -3.62 | 0.355 | 8.61 | 26.38 | 4576 | -- | -- |
| 146.53 | 0.564 | 7.92 | 0.994 | 0.694 | 0.661 | -0.886 | -- | 0.391 | 8.7 | 26.06 | 5897 | -- | -- |
| 145.7 | 0.562 | 7.99 | 0.158 | 0.761 | 1.09 | -- | -3.81 | 0.379 | 8.5 | 26.85 | 4630 | -- | -- |
| 148.75 | 0.568 | 7.91 | 1.03 | 0.729 | 0.621 | -- | -- | 0.443 | 8.37 | 26.5 | 5937 | -- | -- |
| 171.72 | 0.61 | 7.99 | 0.285 | -- | 0.998 | -- | -3.63 | 0.454 | -- | 29.1 | 5850 | -- | -- |
| 162.54 | 0.598 | 7.89 | 1.26 | 0.726 | -- | -0.92 | -- | 0.504 | 8.63 | -- | -- | -- | -- |
| 165.25 | 0.602 | 7.89 | 1.23 | 0.732 | -- | -- | -- | 0.503 | 8.47 | -- | -- | -- | -- |
| 177.6 | 0.621 | 7.94 | 1.03 | -- | 0.588 | -- | -- | 0.376 | -- | 27.6 | 7202 | -- | -- |
| 161.59 | 0.592 | 8.01 | -- | 0.769 | 1.3 | -- | -- | 0.00754 | 8.42 | 15.68 | 7199 | -- | -- |
| 195.18 | 0.653 | 7.91 | 1.24 | -- | -- | -- | -- | 0.51 | -- | -- | -- | -- | -- |
| 205.29 | 0.67 | 7.92 | -- | 0.737 | -- | -- | -- | 0.366 | 8.34 | -- | -- | -- | -- |
| 183.16 | 0.63 | 8.02 | -- | -- | 1.18 | -- | -- | 0.0333 | -- | 8.801 | 27370 | -- | -- |
| 235.47 | 0.716 | 7.94 | -- | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 141.59 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 142.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 16 | 142.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 17 | 142.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 19 | 142.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 29 | 143.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 6 |
| 33 | 143.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 38 | 143.11 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 57 | 143.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 65 | 143.51 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 21 |
| 80 | 143.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 89 | 143.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 99 | 144.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 101 | 144.02 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 102 | 144.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 103 | 144.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 107 | 144.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 14 |
| 113 | 144.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 119 | 144.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 19 |
| 131 | 144.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 134 | 144.18 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 14 |
| 165 | 144.28 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 21 |
| 177 | 144.34 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 18 |
| 191 | 144.43 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 192 | 144.43 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 21 |
| 196 | 144.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 6 |
| 197 | 144.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 201 | 144.46 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 202 | 144.46 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 207 | 144.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 12 |
| 220 | 144.53 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 278 | 144.74 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 282 | 144.78 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 283 | 144.78 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 3 |
| 285 | 144.79 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 290 | 144.82 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 293 | 144.83 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 310 | 144.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 313 | 144.86 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 318 | 144.87 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 19 |
| 322 | 144.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 331 | 144.90 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 6 |
| 359 | 144.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 385 | 145.01 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 410 | 145.06 | radiation | 1 | 1440 | < th | dose dependent | sin | 8 | NA |
| 421 | 145.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 521 | 145.16 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 537 | 145.18 | radiation | 1 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 573 | 145.19 | radiation | 1 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 600 | 145.22 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 626 | 145.25 | radiation | 1 | 4320 | > th | dose independent | sin | 9 | NA |
| 627 | 145.25 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 648 | 145.27 | temperature | 30 | 4320 | < th | dose independent | sin | 11 | NA |
| 707 | 145.34 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 726 | 145.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 19 |
| 727 | 145.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 21 |
| 738 | 145.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 751 | 145.37 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 17 |
| 758 | 145.37 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 21 |
| 762 | 145.37 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 763 | 145.37 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 773 | 145.38 | temperature | 30 | 4320 | > th | dose independent | sin | 11 | NA |
| 774 | 145.38 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 775 | 145.38 | radiation | 1 | 4320 | < th | dose independent | sin | 9 | NA |
| 776 | 145.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 12 |
| 777 | 145.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 14 |
| 846 | 145.40 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 985 | 145.42 | temperature | 30 | 4320 | > th | dose independent | sin | 1 | NA |