Os07g0533800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os07g0533800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.35 | 0.502 | 9.1 | 0.224 | 0.902 | 1.38 | -0.243 | -0.591 | 0.841 | 10.8 | 22.53 | 242 | -- | -- |
| 114.94 | 0.499 | 9.1 | 0.206 | 0.888 | 1.36 | 0.16 | -- | 0.838 | 10.8 | 22.94 | 242 | -- | -- |
| 114.48 | 0.498 | 9.1 | 0.215 | 0.901 | 1.36 | -- | -0.4 | 0.839 | 10.7 | 22.86 | 238 | -- | -- |
| 115.05 | 0.5 | 9.1 | 0.213 | 0.887 | 1.36 | -- | -- | 0.837 | 10.7 | 22.98 | 242 | -- | -- |
| 123.92 | 0.518 | 9.12 | 0.207 | -- | 1.32 | -- | -0.509 | 0.874 | -- | 29.76 | 547 | -- | -- |
| 139.02 | 0.553 | 9.13 | 0.118 | 0.957 | -- | -0.127 | -- | 0.743 | 5.1 | -- | -- | -- | -- |
| 139.06 | 0.552 | 9.13 | 0.118 | 0.956 | -- | -- | -- | 0.743 | 5.1 | -- | -- | -- | -- |
| 124.29 | 0.519 | 9.12 | 0.193 | -- | 1.3 | -- | -- | 0.862 | -- | 28.7 | 547 | -- | -- |
| 116.23 | 0.502 | 9.11 | -- | 0.869 | 1.33 | -- | -- | 0.811 | 10.6 | 22.96 | 242 | -- | -- |
| 187.01 | 0.639 | 9.14 | 0.153 | -- | -- | -- | -- | 0.768 | -- | -- | -- | -- | -- |
| 139.43 | 0.552 | 9.13 | -- | 0.958 | -- | -- | -- | 0.73 | 5.1 | -- | -- | -- | -- |
| 125.26 | 0.521 | 9.12 | -- | -- | 1.28 | -- | -- | 0.843 | -- | 26.14 | 550 | -- | -- |
| 187.62 | 0.639 | 9.14 | -- | -- | -- | -- | -- | 0.751 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.10 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 17 |
| 2 | 110.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 3 | 110.73 | temperature | 20 | 10 | > th | dose dependent | sin | 18 | NA |
| 5 | 111.01 | temperature | 10 | 10 | > th | dose dependent | sin | 19 | NA |
| 14 | 111.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 20 | 112.14 | radiation | 20 | 90 | < th | dose dependent | sin | 20 | NA |
| 21 | 112.27 | radiation | 20 | 270 | < th | dose dependent | sin | 23 | NA |
| 22 | 112.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 37 | 112.98 | radiation | 10 | 270 | > th | dose independent | sin | 22 | NA |
| 42 | 113.09 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 23 |
| 58 | 113.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 62 | 113.71 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 15 | 8 |
| 87 | 114.05 | radiation | 20 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 93 | 114.13 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 17 |
| 99 | 114.17 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 111 | 114.31 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 122 | 114.45 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 141 | 114.67 | temperature | 30 | 10 | < th | dose dependent | sin | 19 | NA |
| 156 | 114.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 16 |
| 168 | 114.82 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 188 | 114.95 | humidity | 50 | 10 | > th | dose dependent | sin | 20 | NA |
| 191 | 114.97 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 10 | 15 |
| 198 | 115.03 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 10 |
| 211 | 115.03 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 216 | 115.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 223 | 115.14 | atmosphere | 1000 | 270 | < th | dose independent | sin | 18 | NA |
| 240 | 115.24 | humidity | 80 | 10 | < th | dose dependent | sin | 19 | NA |
| 291 | 115.42 | radiation | 20 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 314 | 115.52 | radiation | 20 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 316 | 115.53 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 17 |
| 320 | 115.53 | humidity | 80 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 355 | 115.65 | radiation | 10 | 270 | > th | dose independent | no | NA | NA |
| 445 | 115.74 | radiation | 10 | 10 | < th | dose dependent | sin | 19 | NA |
| 461 | 115.79 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 462 | 115.79 | radiation | 1 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 463 | 115.80 | radiation | 10 | 270 | < th | dose independent | sin | 23 | NA |
| 493 | 115.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 510 | 115.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 538 | 116.06 | radiation | 10 | 270 | < th | dose independent | rect. | 5 | 15 |
| 546 | 116.08 | radiation | 1 | 270 | > th | dose dependent | sin | 22 | NA |
| 568 | 116.18 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 7 |
| 569 | 116.18 | humidity | 80 | 10 | < th | dose dependent | rect. | 12 | 7 |
| 577 | 116.19 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 598 | 116.31 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 599 | 116.31 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 8 |
| 626 | 116.42 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 16 | 17 |
| 629 | 116.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 655 | 116.51 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 5 |
| 664 | 116.54 | humidity | 70 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 708 | 116.64 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 720 | 116.67 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 17 |
| 734 | 116.71 | humidity | 90 | 90 | < th | dose dependent | rect. | 7 | 11 |
| 738 | 116.72 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 761 | 116.76 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 788 | 116.83 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 16 |
| 813 | 116.88 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 15 | 19 |
| 892 | 117.08 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 898 | 117.10 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 954 | 117.15 | temperature | 30 | 720 | > th | dose dependent | rect. | 10 | 5 |