Os04g0685200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os04g0685200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 383.48 | 0.92 | 8.38 | -2.92 | 1.69 | 2.64 | 0.279 | 1.5 | -0.667 | 10.3 | 68 | 1202 | 7.98 | -- |
| 386.22 | 0.915 | 8.41 | -3.08 | 1.76 | 2.71 | 0.128 | -- | -0.744 | 10.3 | 68.21 | 1198 | 9.06 | -- |
| 383.29 | 0.912 | 8.38 | -2.92 | 1.72 | 2.62 | -- | 1.45 | -0.688 | 10.3 | 68.15 | 1202 | 8.69 | -- |
| 386.26 | 0.915 | 8.4 | -3.08 | 1.75 | 2.7 | -- | -- | -0.74 | 10.3 | 68.18 | 1202 | 9.07 | -- |
| 520.32 | 1.06 | 8.46 | -2.75 | -- | 2.39 | -- | 2 | -0.825 | -- | 70 | 1333 | 8.16 | -- |
| 653.06 | 1.2 | 8.44 | -2.79 | 1.5 | -- | 0.0965 | -- | -0.896 | 8.63 | -- | -- | -- | -- |
| 653.09 | 1.2 | 8.44 | -2.79 | 1.5 | -- | -- | -- | -0.896 | 8.64 | -- | -- | -- | -- |
| 519.32 | 1.06 | 8.44 | -3.15 | -- | 2.63 | -- | -- | -0.721 | -- | 69.5 | 1289 | 6.41 | -- |
| 628.15 | 1.17 | 8.31 | -- | 1.62 | 2.73 | -- | -- | -0.287 | 9.99 | 68 | 1267 | 8.15 | -- |
| 779.82 | 1.3 | 8.48 | -2.78 | -- | -- | -- | -- | -0.883 | -- | -- | -- | -- | -- |
| 857.63 | 1.37 | 8.37 | -- | 1.49 | -- | -- | -- | -0.586 | 8.78 | -- | -- | -- | -- |
| 762.39 | 1.29 | 8.39 | -- | -- | 2.36 | -- | -- | -0.482 | -- | 69.84 | 1338 | 7.42 | -- |
| 983.91 | 1.46 | 8.41 | -- | -- | -- | -- | -- | -0.574 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 405.77 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 2 | 407.18 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 3 | 407.43 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 4 | 407.80 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 5 | 408.00 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 7 | 409.15 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 8 | 409.37 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 9 | 409.42 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 21 |
| 27 | 410.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 41 | 412.55 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 45 | 413.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 47 | 413.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 58 | 414.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 63 | 415.02 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 102 | 417.41 | humidity | 70 | 1440 | < th | dose independent | sin | 12 | NA |
| 105 | 418.00 | radiation | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 114 | 418.57 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 115 | 418.63 | humidity | 80 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 118 | 418.70 | humidity | 70 | 1440 | < th | dose dependent | sin | 14 | NA |
| 126 | 418.87 | radiation | 10 | 1440 | > th | dose independent | sin | 12 | NA |
| 141 | 419.08 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 168 | 419.38 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 201 | 419.60 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 223 | 420.45 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 225 | 420.48 | radiation | 1 | 1440 | > th | dose dependent | sin | 12 | NA |
| 244 | 421.00 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 257 | 421.25 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 264 | 421.47 | humidity | 60 | 1440 | > th | dose independent | sin | 15 | NA |
| 267 | 421.53 | wind | 3 | 43200 | > th | dose dependent | sin | 5 | NA |
| 285 | 421.95 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 304 | 422.52 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 305 | 422.52 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 307 | 422.58 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 313 | 422.63 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 13 |
| 316 | 422.64 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 324 | 422.88 | wind | 3 | 43200 | > th | dose dependent | sin | 10 | NA |
| 332 | 423.08 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 367 | 423.54 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 15 |
| 402 | 423.86 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 15 |
| 418 | 424.27 | temperature | 30 | 1440 | > th | dose dependent | sin | 16 | NA |
| 424 | 424.35 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 478 | 424.72 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 483 | 424.80 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 514 | 425.04 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 515 | 425.07 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 547 | 425.10 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 591 | 425.37 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 655 | 425.69 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 661 | 425.76 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 842 | 426.39 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 843 | 426.43 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 846 | 426.51 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 862 | 426.54 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 885 | 426.64 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 897 | 426.70 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 972 | 427.52 | humidity | 70 | 1440 | > th | dose independent | sin | 11 | NA |