Os04g0535200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0535200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Peptidase A1, pepsin family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.03 | 0.72 | 5.42 | 3.1 | 1.41 | 0.643 | -1.04 | 10.8 | 0.358 | 16.6 | 5.843 | 6821 | -- | -- |
| 310.49 | 0.821 | 5.8 | 0.597 | 1.4 | 0.938 | -2.01 | -- | -0.13 | 16.7 | 30.97 | 3524 | -- | -- |
| 237.8 | 0.718 | 5.41 | 3.13 | 1.4 | 0.658 | -- | 11 | 0.361 | 16.6 | 4.867 | 6888 | -- | -- |
| 308.23 | 0.818 | 5.97 | -0.509 | 1.35 | 1.17 | -- | -- | -0.904 | 16.5 | 25.64 | 47520 | -- | -- |
| 341.73 | 0.861 | 5.41 | 3.06 | -- | 0.467 | -- | 10.6 | 0.339 | -- | 1.917 | 6804 | -- | -- |
| 332.3 | 0.855 | 5.84 | 0.705 | 1.37 | -- | -1.39 | -- | -0.31 | 16.7 | -- | -- | -- | -- |
| 337.34 | 0.86 | 5.84 | 0.697 | 1.36 | -- | -- | -- | -0.317 | 16.7 | -- | -- | -- | -- |
| 402.76 | 0.939 | 5.84 | 0.491 | -- | 1.2 | -- | -- | -0.404 | -- | 25.64 | 47520 | -- | -- |
| 310.95 | 0.821 | 5.94 | -- | 1.38 | 0.898 | -- | -- | -0.741 | 16.7 | 26.3 | 47520 | -- | -- |
| 435.22 | 0.975 | 5.83 | 0.646 | -- | -- | -- | -- | -0.353 | -- | -- | -- | -- | -- |
| 350.16 | 0.875 | 5.86 | -- | 1.35 | -- | -- | -- | -0.395 | 16.8 | -- | -- | -- | -- |
| 409 | 0.945 | 5.85 | -- | -- | 1.27 | -- | -- | -0.46 | -- | 25.64 | 47520 | -- | -- |
| 446.24 | 0.986 | 5.84 | -- | -- | -- | -- | -- | -0.424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 3 | 230.67 | wind | 3 | 43200 | > th | dose dependent | rect. | 21 | 12 |
| 4 | 230.90 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 6 | 231.03 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 17 | 231.52 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 27 | 232.08 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 31 | 232.28 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 35 | 232.47 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 70 | 233.91 | wind | 5 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 92 | 234.74 | wind | 5 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 103 | 234.96 | wind | 5 | 43200 | < th | dose independent | sin | 8 | NA |
| 120 | 235.22 | wind | 3 | 43200 | > th | dose dependent | sin | 8 | NA |
| 124 | 235.43 | wind | 5 | 43200 | > th | dose independent | sin | 8 | NA |
| 229 | 237.31 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 234 | 237.43 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 11 |
| 238 | 237.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 6 |
| 267 | 237.86 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 6 |
| 279 | 238.10 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 282 | 238.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 316 | 238.45 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 322 | 238.52 | temperature | 10 | 4320 | > th | dose dependent | sin | 1 | NA |
| 360 | 238.86 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 382 | 239.05 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 496 | 239.97 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 511 | 240.03 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 9 |
| 513 | 240.04 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 676 | 240.96 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 15 |
| 684 | 240.98 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 7 |
| 712 | 241.07 | temperature | 30 | 4320 | < th | dose dependent | sin | 2 | NA |
| 720 | 241.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 750 | 241.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 896 | 241.92 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 902 | 241.95 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 951 | 242.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 967 | 242.16 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 968 | 242.16 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 984 | 242.21 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 23 |