Os04g0448300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os04g0448300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 209.15 | 0.679 | 10.9 | 0.193 | 1.07 | 0.0669 | 1.38 | -5.92 | 0.406 | 10.9 | 22.1 | 345 | -- | -- |
| 227.46 | 0.702 | 10.8 | 1.28 | 1.13 | -0.657 | 1.29 | -- | 0.658 | 10.9 | 27.68 | 108 | -- | -- |
| 212.91 | 0.68 | 10.9 | 0.0119 | 1.08 | 0.236 | -- | -6.92 | 0.329 | 10.5 | 22.6 | 556 | -- | -- |
| 233.94 | 0.712 | 10.8 | 1.38 | 0.987 | -0.723 | -- | -- | 0.581 | 11.2 | 32.93 | 671 | -- | -- |
| 272.97 | 0.77 | 10.9 | 0.363 | -- | -0.503 | -- | -5.15 | 0.479 | -- | 22.26 | 727 | -- | -- |
| 233.61 | 0.717 | 10.8 | 1.21 | 1.09 | -- | 1.43 | -- | 0.663 | 10.3 | -- | -- | -- | -- |
| 241.66 | 0.728 | 10.8 | 1.27 | 1.08 | -- | -- | -- | 0.668 | 10.5 | -- | -- | -- | -- |
| 286.9 | 0.789 | 10.8 | 1.46 | -- | -0.977 | -- | -- | 0.76 | -- | 24.29 | 759 | -- | -- |
| 278.38 | 0.777 | 10.8 | -- | 0.998 | -0.947 | -- | -- | 0.509 | 10.8 | 35.1 | 694 | -- | -- |
| 313.44 | 0.827 | 10.8 | 1.25 | -- | -- | -- | -- | 0.663 | -- | -- | -- | -- | -- |
| 284.14 | 0.789 | 10.8 | -- | 1.07 | -- | -- | -- | 0.526 | 10.4 | -- | -- | -- | -- |
| 339.18 | 0.858 | 10.9 | -- | -- | -1.26 | -- | -- | 0.464 | -- | 34.93 | 695 | -- | -- |
| 354.7 | 0.879 | 10.8 | -- | -- | -- | -- | -- | 0.525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 204.95 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 21 |
| 9 | 208.41 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 10 | 208.43 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 16 | 208.90 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 18 | 208.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 20 | 209.09 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 33 | 209.38 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 34 | 209.39 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 38 | 209.44 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 61 | 209.97 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 62 | 209.97 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 23 |
| 64 | 210.02 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 65 | 210.07 | temperature | 25 | 270 | < th | dose independent | rect. | 18 | 23 |
| 80 | 210.26 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 85 | 210.29 | humidity | 80 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 90 | 210.36 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 91 | 210.38 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 23 |
| 102 | 210.51 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 23 |
| 115 | 210.65 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 22 |
| 119 | 210.68 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 23 |
| 131 | 210.81 | humidity | 60 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 133 | 210.88 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 134 | 210.88 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 23 |
| 135 | 210.89 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 140 | 210.99 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 23 |
| 143 | 211.00 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 23 |
| 153 | 211.14 | temperature | 25 | 720 | > th | dose independent | sin | 7 | NA |
| 157 | 211.19 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 161 | 211.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 177 | 211.33 | radiation | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 194 | 211.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 202 | 211.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 203 | 211.48 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 12 |
| 207 | 211.49 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 23 |
| 208 | 211.50 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 212 | 211.51 | radiation | 40 | 14400 | < th | dose independent | sin | 10 | NA |
| 215 | 211.51 | radiation | 40 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 216 | 211.51 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 242 | 211.54 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 268 | 211.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 272 | 211.69 | radiation | 20 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 278 | 211.74 | radiation | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 282 | 211.75 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 324 | 211.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 330 | 211.92 | radiation | 40 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 350 | 211.96 | radiation | 20 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 366 | 212.02 | humidity | 60 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 413 | 212.10 | humidity | 60 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 421 | 212.10 | radiation | 40 | 14400 | > th | dose dependent | sin | 9 | NA |
| 428 | 212.11 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 546 | 212.26 | humidity | 60 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 549 | 212.28 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 550 | 212.28 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 557 | 212.29 | radiation | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 564 | 212.31 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 566 | 212.32 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 578 | 212.34 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 8 |
| 607 | 212.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 666 | 212.46 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 746 | 212.57 | radiation | 40 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 756 | 212.60 | humidity | 70 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 788 | 212.70 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 794 | 212.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 837 | 212.80 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 840 | 212.81 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 853 | 212.82 | radiation | 10 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 903 | 212.88 | radiation | 10 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 920 | 212.91 | radiation | 10 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 949 | 212.93 | radiation | 40 | 14400 | > th | dose dependent | no | NA | NA |