BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0673000 Os04g0673000|AK064182
(260 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0673000 Homeodomain-like containing protein 497 e-141
Os08g0100800 Homeodomain-like containing protein 218 4e-57
Os02g0631200 Homeodomain-like containing protein 132 2e-31
Os04g0523100 Homeodomain-like containing protein 114 8e-26
Os05g0305700 Homeodomain-like containing protein 82 3e-16
>Os04g0673000 Homeodomain-like containing protein
Length = 260
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/260 (92%), Positives = 240/260 (92%)
Query: 1 MAADSSMGFHQGITASMYNHHMLSFQSNSDLXXXXXXXXXMVMAPRSMNGTSSSAGLFVS 60
MAADSSMGFHQGITASMYNHHMLSFQSNSDL MVMAPRSMNGTSSSAGLFVS
Sbjct: 1 MAADSSMGFHQGITASMYNHHMLSFQSNSDLGGGAGAAAGMVMAPRSMNGTSSSAGLFVS 60
Query: 61 PNTGELNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVALRCWWATSKDRRKKPDGFY 120
PNTGELNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVALRCWWATSKDRRKKPDGFY
Sbjct: 61 PNTGELNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVALRCWWATSKDRRKKPDGFY 120
Query: 121 TGKKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHTNQQCQVPKEEVPVVDSAT 180
TGKKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHTNQQCQVPKEEVPVVDSAT
Sbjct: 121 TGKKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHTNQQCQVPKEEVPVVDSAT 180
Query: 181 QXXXXXXXXXXXQIATNIETFKTGENTDLFFRTNNNFKNILSRMSETPGIMGQMPQLPVQ 240
Q QIATNIETFKTGENTDLFFRTNNNFKNILSRMSETPGIMGQMPQLPVQ
Sbjct: 181 QHLLEENNHLLNQIATNIETFKTGENTDLFFRTNNNFKNILSRMSETPGIMGQMPQLPVQ 240
Query: 241 VNEDHLSSLLQLDRMVRGDP 260
VNEDHLSSLLQLDRMVRGDP
Sbjct: 241 VNEDHLSSLLQLDRMVRGDP 260
>Os08g0100800 Homeodomain-like containing protein
Length = 268
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 137/273 (50%), Positives = 165/273 (60%), Gaps = 28/273 (10%)
Query: 1 MAADSS--MGFHQGITASMYNHH-----MLSFQSNSDLXXXXXXXXXMVMAPRSMNGTSS 53
MAADSS M +QG+ + MLSFQS+S M++AP +SS
Sbjct: 1 MAADSSTAMTLYQGVPFHQQQNQIEIESMLSFQSSS--IPPPPTPATMLLAP-----SSS 53
Query: 54 SAGL----FVSPNTGE-----LNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVALRC 104
S+ FV+ + + L L +GL+RYA EPNI+KY KIAAMLP RT+RDVALRC
Sbjct: 54 SSDFRNYKFVTCSPADWPHHDLAILNDGLLRYAHEPNIIKYTKIAAMLPTRTIRDVALRC 113
Query: 105 WWATSKD-RRKKPDGFYTGKKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHTN 163
W + RR K D YTGK IR +K D MV+S AN + N + PFSISM +
Sbjct: 114 RWTKDNESRRGKLDQVYTGKMIRGLK---DNMVSSTLAANIQIQNPNNMVPFSISMHYQG 170
Query: 164 QQCQVPKEEVPVVDSATQXXXXXXXXXXXQIATNIETFKTGENTDLFFRTNNNFKNILSR 223
Q + KE VPV+DSATQ QIA NIETFKT EN DLF RTNNN + +L R
Sbjct: 171 QNSLLHKE-VPVLDSATQHLLEENNQLLSQIAENIETFKTVENMDLFLRTNNNIRTVLKR 229
Query: 224 MSETPGIMGQMPQLPVQVNEDHLSSLLQLDRMV 256
MSETPGIMGQMP LPV VNE L++LLQ+DRMV
Sbjct: 230 MSETPGIMGQMPPLPVPVNEGSLNTLLQMDRMV 262
>Os02g0631200 Homeodomain-like containing protein
Length = 290
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 104/190 (54%), Gaps = 11/190 (5%)
Query: 65 ELNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVALRCWWATSKD---RRKKPDGFYT 121
EL L +GL++YA EP IMKYIKIAAMLP +TVRDVA+RC W +K RR+K D Y
Sbjct: 91 ELQLLNDGLLKYANEPGIMKYIKIAAMLPEKTVRDVAMRCQWMAAKKENTRRRKTDEHYL 150
Query: 122 GKKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHT-NQQCQVPKEEVPVVDSAT 180
GKK RD K DKMV S+ N + + +P +++ + Q Q E +D A
Sbjct: 151 GKKTRDRK---DKMVESSWATNRQVQTTDIRSPSTLACNTVRDNQFQSGASE---IDRAM 204
Query: 181 QXXXXXXXXXXXQIATNIETFKTGENTDLFFRTNNNFKNILSRMSETPGIMGQMPQLPVQ 240
QI NI T + N DLF N ++L MS+ PGIM +MP LPV
Sbjct: 205 LNILEENARVLKQIGENIMTSQVQNNIDLFHHARRNISDLLQSMSQMPGIMSKMPPLPVS 264
Query: 241 VNEDHLSSLL 250
+ +D L+S +
Sbjct: 265 I-DDRLASYI 273
>Os04g0523100 Homeodomain-like containing protein
Length = 293
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 7/188 (3%)
Query: 65 ELNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVALRCWWATSKD--RRKKPDGFYTG 122
EL+ LK+GL +Y E IMKYIKIAA LP++TVRDVA++C W ++ RR+K + +TG
Sbjct: 90 ELDVLKDGLQKYGNEQGIMKYIKIAASLPSKTVRDVAMKCQWLGKRENSRRRKSEDHHTG 149
Query: 123 KKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHTNQQCQVPKEEVPVVDSATQX 182
+K+++ K KM + H +T P +S H Q +D A Q
Sbjct: 150 RKMKERKA---KMAEPSLWGTNHPVQTDTRVPSFVS--HNAIQNNQILTGATGIDRAMQH 204
Query: 183 XXXXXXXXXXQIATNIETFKTGENTDLFFRTNNNFKNILSRMSETPGIMGQMPQLPVQVN 242
QI N+ + N +LF RT N +L M++ PGIM +MP LPV VN
Sbjct: 205 LLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNINGLLQTMNQMPGIMSKMPPLPVSVN 264
Query: 243 EDHLSSLL 250
E+ S +L
Sbjct: 265 ENLASFVL 272
>Os05g0305700 Homeodomain-like containing protein
Length = 235
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 16/199 (8%)
Query: 56 GLFVSPNTGELNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVALRCWWATSKDRRKK 115
GL V E L+ GL YA + +++Y KIA LP++TVRDVALRC W K+ KK
Sbjct: 43 GLSVRWTPEEQAVLEGGLASYAADAAVVRYAKIAMNLPDKTVRDVALRCRWMAKKESNKK 102
Query: 116 PDGFYTGKKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHTNQQCQVPKEEVPV 175
+ K + D S+S HL P+S+ + +P ++ V
Sbjct: 103 RKEESSKKNKEKKERAND----SSSKGPAHLVARPNAAPYSLPV--------LPMDDDDV 150
Query: 176 ----VDSATQXXXXXXXXXXXQIATNIETFKTGENTDLFFRTNNNFKNILSRMSETPGIM 231
+ T QI TNI + EN L +T +N +L + + P IM
Sbjct: 151 SYKTIGGQTGQILEHNAQILNQIYTNISNMQVQENIPLLCQTRDNILAVLKEIGDVPEIM 210
Query: 232 GQMPQLPVQVNEDHLSSLL 250
QMP LPV++NE+ +S+L
Sbjct: 211 RQMPPLPVKLNEELANSML 229
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,316,812
Number of extensions: 252843
Number of successful extensions: 514
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 5
Length of query: 260
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 161
Effective length of database: 11,866,615
Effective search space: 1910525015
Effective search space used: 1910525015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)