Os02g0631200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os02g0631200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.58 | 0.272 | 10.9 | -0.872 | 0.759 | -0.641 | 0.0784 | -1.44 | 0.0798 | 10.5 | 37.66 | 261 | -- | -- |
| 35.03 | 0.276 | 10.9 | -0.812 | 0.758 | -0.664 | -0.049 | -- | 0.0932 | 10.4 | 40.17 | 277 | -- | -- |
| 33.6 | 0.27 | 10.9 | -0.87 | 0.759 | -0.647 | -- | -1.41 | 0.0828 | 10.5 | 37.47 | 261 | -- | -- |
| 35.02 | 0.276 | 10.9 | -0.837 | 0.764 | -0.711 | -- | -- | 0.0888 | 10.5 | 40.17 | 278 | -- | -- |
| 56.01 | 0.349 | 11 | -1.08 | -- | -0.422 | -- | -1.15 | 0.00715 | -- | 35.05 | 883 | -- | -- |
| 39.79 | 0.296 | 10.9 | -0.853 | 0.698 | -- | -0.0412 | -- | 0.0424 | 9.54 | -- | -- | -- | -- |
| 39.8 | 0.295 | 10.9 | -0.855 | 0.698 | -- | -- | -- | 0.0423 | 9.53 | -- | -- | -- | -- |
| 44 | 0.309 | 11 | -0.789 | -- | -0.959 | -- | -- | 0.0199 | -- | 1.56 | 1103 | -- | -- |
| 53.41 | 0.34 | 10.9 | -- | 0.758 | -0.69 | -- | -- | 0.185 | 10.7 | 40.07 | 324 | -- | -- |
| 68.5 | 0.387 | 11 | -0.86 | -- | -- | -- | -- | 0.0441 | -- | -- | -- | -- | -- |
| 59.07 | 0.36 | 10.9 | -- | 0.699 | -- | -- | -- | 0.138 | 9.62 | -- | -- | -- | -- |
| 58.34 | 0.356 | 10.9 | -- | -- | -1.15 | -- | -- | 0.199 | -- | 0.24 | 1126 | -- | -- |
| 88.01 | 0.438 | 10.9 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.69 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 2 | 30.69 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 13 | 30.95 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 21 | 31.06 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 34 | 31.21 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 39 | 31.26 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 84 | 31.73 | temperature | 25.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 149 | 32.12 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 23 |
| 166 | 32.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 214 | 32.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 221 | 32.55 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 268 | 32.69 | temperature | 25.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 312 | 32.85 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 22 |
| 347 | 33.03 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 1 | 17 |
| 352 | 33.04 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 381 | 33.12 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 384 | 33.13 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 20 |
| 396 | 33.16 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 427 | 33.24 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 16 |
| 436 | 33.27 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 438 | 33.28 | radiation | 40.0 | 270 | > th | dose independent | rect. | 12 | 23 |
| 452 | 33.31 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 469 | 33.35 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 486 | 33.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 20 |
| 491 | 33.40 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 495 | 33.41 | temperature | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 504 | 33.43 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 514 | 33.45 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 529 | 33.48 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 533 | 33.49 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 6 |
| 552 | 33.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 15 |
| 555 | 33.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 593 | 33.62 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 9 |
| 624 | 33.68 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 648 | 33.72 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 677 | 33.77 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 683 | 33.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 700 | 33.80 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 712 | 33.80 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 725 | 33.80 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 8 | 19 |
| 751 | 33.82 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 767 | 33.84 | temperature | 30.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 778 | 33.85 | radiation | 40.0 | 270 | > th | dose independent | no | NA | NA |
| 779 | 33.85 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 941 | 33.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 15 |
| 955 | 33.87 | radiation | 40.0 | 270 | > th | dose independent | sin | 22 | NA |
| 967 | 33.88 | radiation | 40.0 | 270 | < th | dose independent | no | NA | NA |
| 969 | 33.88 | wind | 9.0 | 30 | < th | dose independent | rect. | 1 | 17 |