Os04g0673000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os04g0673000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.49 | 0.331 | 10.2 | -1.43 | 0.954 | 0.643 | 0.114 | -0.698 | -0.135 | 5.19 | 25.96 | 5486 | -- | -- |
| 49.65 | 0.328 | 10.2 | -1.25 | 0.955 | 0.574 | 0.104 | -- | -0.106 | 5.13 | 25.72 | 5473 | -- | -- |
| 49.53 | 0.328 | 10.2 | -1.43 | 0.954 | 0.644 | -- | -0.688 | -0.135 | 5.19 | 25.96 | 5486 | -- | -- |
| 49.65 | 0.328 | 10.2 | -1.25 | 0.954 | 0.583 | -- | -- | -0.0974 | 5.22 | 25.78 | 5460 | -- | -- |
| 96.56 | 0.458 | 10.2 | -1.45 | -- | 0.725 | -- | -0.771 | -0.132 | -- | 26.25 | 5578 | -- | -- |
| 61.65 | 0.368 | 10.2 | -1.05 | 0.985 | -- | 0.213 | -- | -0.0637 | 5 | -- | -- | -- | -- |
| 61.76 | 0.368 | 10.2 | -1.05 | 0.987 | -- | -- | -- | -0.0647 | 5.02 | -- | -- | -- | -- |
| 96.62 | 0.458 | 10.2 | -1.24 | -- | 0.652 | -- | -- | -0.0736 | -- | 26.2 | 5568 | -- | -- |
| 86.99 | 0.434 | 10.2 | -- | 0.93 | 0.289 | -- | -- | 0.074 | 5.11 | 26.77 | 5465 | -- | -- |
| 112.94 | 0.497 | 10.2 | -1.01 | -- | -- | -- | -- | -0.0395 | -- | -- | -- | -- | -- |
| 90.61 | 0.445 | 10.2 | -- | 0.969 | -- | -- | -- | 0.0518 | 5.06 | -- | -- | -- | -- |
| 128.09 | 0.529 | 10.2 | -- | -- | -0.739 | -- | -- | 0.0814 | -- | 26.2 | 5568 | -- | -- |
| 139.88 | 0.552 | 10.2 | -- | -- | -- | -- | -- | 0.0726 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.42 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 49.31 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 3 | 49.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 12 | 49.61 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 4 |
| 18 | 49.65 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 21 | 49.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 24 | 49.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 5 |
| 42 | 49.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 76 | 49.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 96 | 49.97 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 107 | 49.99 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 13 |
| 116 | 50.02 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 140 | 50.07 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 170 | 50.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 195 | 50.14 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 196 | 50.14 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 197 | 50.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 215 | 50.14 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 230 | 50.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 240 | 50.17 | temperature | 25 | 4320 | > th | dose dependent | sin | 21 | NA |
| 242 | 50.17 | temperature | 10 | 4320 | > th | dose dependent | sin | 1 | NA |
| 260 | 50.19 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 273 | 50.20 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 309 | 50.23 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 320 | 50.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 323 | 50.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 393 | 50.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 401 | 50.30 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 487 | 50.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 522 | 50.37 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 523 | 50.37 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 525 | 50.37 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 647 | 50.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 675 | 50.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 689 | 50.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 738 | 50.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 4 |
| 742 | 50.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 818 | 50.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 846 | 50.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 848 | 50.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 891 | 50.55 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 928 | 50.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 10 |
| 958 | 50.57 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 12 |