BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0673000 Os04g0673000|AK064182
(260 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60670.2 | chr1:22344099-22347140 FORWARD LENGTH=255 114 7e-26
AT1G10820.2 | chr1:3601437-3604650 REVERSE LENGTH=259 107 8e-24
AT3G07565.4 | chr3:2413823-2415872 FORWARD LENGTH=269 87 8e-18
AT1G68160.1 | chr1:25546168-25548625 REVERSE LENGTH=274 69 2e-12
>AT1G60670.2 | chr1:22344099-22347140 FORWARD LENGTH=255
Length = 254
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 104/209 (49%), Gaps = 12/209 (5%)
Query: 42 VMAPRSMNGTSSSAGLFVSPNTGELNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVA 101
V +P S+ G A L V + E L++GL ++ EP + KY+KIAA LP+++VRDVA
Sbjct: 35 VNSPTSVTGLKHEASLAVDWSVEEQYILEKGLSKFKDEPQVTKYVKIAATLPDKSVRDVA 94
Query: 102 LRCWWATSKDRRKKPDGFYTGKKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQH 161
+RC W T K R+K + TG K+ K + + F P T +M H
Sbjct: 95 MRCKWMTQK--RRKGEEHSTGTKVSYRKVVD----LPPKLNMFSTEPQQNAT---YAMNH 145
Query: 162 TNQQCQVPKEEVPVVDSATQXXXXXXXXXXXQIATNIETFKTGENTDLFFRTNNNFKNIL 221
Q ++P E + A QI++N+ K +N LF+ NN IL
Sbjct: 146 MCQSARMPFEG---LSDAVMERLRQNAQAFSQISSNLSVCKPQDNVSLFYMARNNISAIL 202
Query: 222 SRMSETPGIMGQMPQLPVQVNEDHLSSLL 250
+ M E PGI+ +MP LPV +N D SSL+
Sbjct: 203 NDMKEMPGIISRMPPLPVSINNDLASSLV 231
>AT1G10820.2 | chr1:3601437-3604650 REVERSE LENGTH=259
Length = 258
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 50 GTSSSAGLFVSPNTGELNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVALRCWWATS 109
G A L + + E L+ GL + EP I KY+KIAA LP++TVRDVALRC W T
Sbjct: 47 GVKQEAALVMDWSVEEQYVLENGLAKLKDEPKISKYVKIAATLPDKTVRDVALRCRWMTR 106
Query: 110 KDRRKKPDG----FYTGKKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHTNQQ 165
K RRK+ D + +K+ D P + M+++ N ++ N
Sbjct: 107 K-RRKREDNNAAKNISTRKVVDTSP-ELNMLSNVPQQN--------------ALYVLNNM 150
Query: 166 CQVPKEEVPVVDSATQXXXXXXXXXXXQIATNIETFKTGENTDLFFRTNNNFKNILSRMS 225
C + + A QI+ N+ K +N LF + NN IL+ M
Sbjct: 151 CHSTRTPFEGLSDAVMDLLQQNAQAFSQISYNLSACKLQDNISLFHQARNNISAILTDMK 210
Query: 226 ETPGIMGQMPQLPVQVNEDHLSSLL 250
E PGIM +MP LPV +N+D S+LL
Sbjct: 211 EMPGIMSRMPALPVSINDDLASNLL 235
>AT3G07565.4 | chr3:2413823-2415872 FORWARD LENGTH=269
Length = 268
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 14/195 (7%)
Query: 65 ELNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVALRCWWATSKDRRKKPDGFYTGKK 124
E + L++ LV+YA EP++ +Y KIA + ++TVRDVALRC W T K+ K+ ++ +K
Sbjct: 70 EQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENGKRRKEDHSSRK 129
Query: 125 IRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHTNQQCQVPKEEVPVVDSATQXXX 184
+D K Q+K S++ ++ HL ++ M + + + + V +
Sbjct: 130 SKDKK--QEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIGGV---SGDLL 184
Query: 185 XXXXXXXXQIATNIETFKTG---------ENTDLFFRTNNNFKNILSRMSETPGIMGQMP 235
Q++TN F+ EN ++ + +N IL+ +++ P +M QMP
Sbjct: 185 EQNAQMFNQLSTNFSAFQVNSTSTFHLLHENVNILCKARDNILAILNDLNDMPEVMKQMP 244
Query: 236 QLPVQVNEDHLSSLL 250
LPV++NE+ +S+L
Sbjct: 245 PLPVKLNEELANSIL 259
>AT1G68160.1 | chr1:25546168-25548625 REVERSE LENGTH=274
Length = 273
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 39/205 (19%)
Query: 69 LKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVA---------------LRCWWATSKDRR 113
L GL +Y P+I YI+I LP++++RD+A L C S +
Sbjct: 88 LDAGLEKYKDMPSIDMYIQIGNTLPDKSIRDIALRCRWLRRKRRKSEELNCGRRASSSK- 146
Query: 114 KKPDGFYTGKKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHTNQQCQVPKEEV 173
GK++ V +MA++ PFS T++Q + E++
Sbjct: 147 --------GKQVESSSKSSIPSVLPHNMASY---------PFSGPSTSTSKQ--ITSEDL 187
Query: 174 PVVDSATQXXXXXXXXXXXQIATNIETFKTGENTDLFFRTNNNFKNILSRMSETPGIMGQ 233
S QI N+ ++K G+N DLF + NN I + ++ PG+M +
Sbjct: 188 ---SSYATNLIEQNVRAFSQIRANLSSYKAGDNLDLFRQARNNLITIQNEINNMPGLMNK 244
Query: 234 MPQLPVQVNEDHLSSLLQLDRMVRG 258
MP LPV +N+D LS ++ + M G
Sbjct: 245 MPPLPVTINDD-LSVMMPFNTMQSG 268
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,865,649
Number of extensions: 173074
Number of successful extensions: 391
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 4
Length of query: 260
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,447,217
Effective search space: 1376896371
Effective search space used: 1376896371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)