Os05g0305700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os05g0305700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.46 | 0.28 | 10.9 | 0.0211 | 0.398 | 1.02 | 0.409 | 0.0969 | 0.123 | 1.9 | 15.79 | 431 | -- | -- |
| 35.46 | 0.277 | 10.9 | 0.00501 | 0.399 | 1.01 | 0.403 | -- | 0.118 | 1.9 | 16.06 | 431 | -- | -- |
| 36.05 | 0.28 | 10.9 | -0.00963 | 0.386 | 1 | -- | -0.0232 | 0.11 | 2.14 | 16.37 | 458 | -- | -- |
| 36.05 | 0.28 | 10.9 | -0.011 | 0.386 | 1 | -- | -- | 0.113 | 2.16 | 16.3 | 457 | -- | -- |
| 39.48 | 0.293 | 10.9 | 0.00155 | -- | 0.981 | -- | 0.241 | 0.126 | -- | 16.1 | 825 | -- | -- |
| 48.32 | 0.326 | 10.9 | 0.249 | 0.364 | -- | 0.514 | -- | 0.277 | 22.8 | -- | -- | -- | -- |
| 49.42 | 0.329 | 10.9 | 0.228 | 0.361 | -- | -- | -- | 0.275 | 23 | -- | -- | -- | -- |
| 39.58 | 0.293 | 10.9 | -0.0396 | -- | 0.965 | -- | -- | 0.111 | -- | 16.6 | 837 | -- | -- |
| 36.05 | 0.28 | 10.9 | -- | 0.385 | 0.998 | -- | -- | 0.116 | 2.16 | 16.31 | 457 | -- | -- |
| 57.53 | 0.354 | 10.8 | 0.236 | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
| 50.79 | 0.333 | 10.9 | -- | 0.363 | -- | -- | -- | 0.249 | 23 | -- | -- | -- | -- |
| 39.61 | 0.293 | 10.9 | -- | -- | 0.946 | -- | -- | 0.118 | -- | 16.7 | 835 | -- | -- |
| 59 | 0.359 | 10.9 | -- | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 2 | 32.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 38 | 33.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 77 | 34.56 | temperature | 10 | 30 | > th | dose dependent | sin | 15 | NA |
| 103 | 34.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 15 |
| 131 | 35.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 141 | 35.10 | temperature | 30 | 10 | < th | dose dependent | sin | 15 | NA |
| 155 | 35.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 199 | 35.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 220 | 35.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 6 |
| 223 | 35.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 8 |
| 501 | 36.02 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 529 | 36.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 587 | 36.13 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 664 | 36.21 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 693 | 36.23 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 17 |
| 717 | 36.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 799 | 36.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 842 | 36.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 855 | 36.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 864 | 36.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 939 | 36.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |