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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0523100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.8 (0.0386) R2 : 0.445
β1 : -2.48 (0.161) R2dD : 0.42 R2D : -0.106
β2 : 0.782 (0.0969) R2dC : 0.0799 R2C : 0.00787
β3 : 2.34 (0.17) R2dE : 0.374 R2E : -0.234
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.12 (0.0915) R2dN8 : 0.324 R2N8 : -0.102
σ : 0.695
deviance : 222.86
__
_____
C
peak time of C : 6.58
E
wheather : temperature
threshold : 6.616
memory length : 7300
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
218.64 0.695 4.89 -3.13 0.823 1.81 -0.224 -3.65 -1.18 6.43 22.63 5972 -- --
222.81 0.695 4.8 -2.5 0.797 2.35 -0.156 -- -1.13 6.64 6.148 7308 -- --
218.74 0.689 4.89 -3.13 0.818 1.82 -- -3.69 -1.17 6.4 22.79 5959 -- --
222.86 0.695 4.8 -2.48 0.782 2.34 -- -- -1.12 6.58 6.616 7300 -- --
250.83 0.738 4.9 -3.1 -- 1.86 -- -3.69 -1.13 -- 22.75 5725 -- --
315.17 0.832 4.66 -1.29 0.82 -- -0.184 -- -0.493 6.31 -- -- -- --
315.25 0.831 4.66 -1.29 0.819 -- -- -- -0.492 6.3 -- -- -- --
253.79 0.742 4.81 -2.48 -- 2.37 -- -- -1.1 -- 7.548 7143 -- --
316.07 0.828 4.66 -- 0.787 1.14 -- -- -0.542 7.08 22.2 1235 -- --
350.1 0.874 4.67 -1.27 -- -- -- -- -0.475 -- -- -- -- --
359.17 0.887 4.63 -- 0.802 -- -- -- -0.349 6.38 -- -- -- --
345.53 0.866 4.69 -- -- 1.1 -- -- -0.534 -- 22.3 1314 -- --
392.57 0.925 4.64 -- -- -- -- -- -0.334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 217.81 humidity 80 43200 > th dose independent rect. 23 4
2 217.85 wind 3 43200 > th dose independent rect. 20 3
3 218.14 wind 3 43200 < th dose independent rect. 21 1
5 218.15 radiation 1 14400 > th dose independent rect. 18 11
12 218.90 humidity 80 43200 > th dose independent rect. 2 1
21 219.48 humidity 80 43200 < th dose independent rect. 22 3
22 219.50 humidity 80 43200 < th dose independent rect. 23 1
24 219.59 humidity 80 43200 < th dose independent rect. 22 5
50 221.38 wind 1 43200 > th dose dependent rect. 19 21
51 221.42 wind 3 43200 < th dose dependent rect. 8 2
52 221.48 humidity 90 14400 > th dose dependent rect. 21 2
54 221.56 humidity 80 43200 < th dose independent rect. 2 1
55 221.61 wind 3 43200 > th dose dependent rect. 14 22
65 221.85 wind 9 43200 < th dose dependent rect. 19 21
73 222.20 wind 1 43200 > th dose dependent rect. 9 1
93 222.47 wind 3 43200 > th dose independent rect. 20 19
94 222.47 temperature 20 1440 > th dose dependent rect. 18 1
95 222.48 wind 3 43200 > th dose independent rect. 19 15
96 222.48 wind 1 43200 > th dose dependent rect. 3 13
101 222.53 wind 1 43200 > th dose dependent rect. 6 9
111 222.63 wind 3 43200 > th dose dependent rect. 2 23
132 222.79 wind 3 43200 > th dose dependent rect. 23 23
133 222.80 wind 3 43200 > th dose dependent no NA NA
137 222.83 wind 3 43200 < th dose independent rect. 19 15
143 222.87 wind 1 43200 > th dose dependent sin 3 NA
192 223.20 radiation 1 14400 > th dose independent rect. 18 1
204 223.22 wind 9 43200 < th dose dependent rect. 3 13
210 223.26 wind 9 43200 > th dose dependent rect. 13 19
227 223.37 wind 3 43200 < th dose independent rect. 19 17
230 223.38 wind 9 43200 < th dose dependent rect. 5 10
243 223.47 wind 9 43200 > th dose independent rect. 17 21
247 223.49 wind 3 43200 > th dose independent rect. 3 12
269 223.59 wind 9 43200 < th dose dependent sin 3 NA
286 223.69 wind 3 43200 > th dose independent rect. 6 4
287 223.70 wind 3 43200 > th dose independent rect. 6 8
302 223.81 humidity 90 14400 < th dose independent rect. 18 1
312 223.84 wind 9 43200 < th dose dependent rect. 9 1
317 223.86 wind 9 43200 < th dose independent rect. 17 21
342 224.03 wind 9 43200 < th dose dependent rect. 15 21
343 224.04 humidity 80 14400 > th dose dependent rect. 18 1
361 224.14 wind 3 43200 < th dose independent rect. 6 4
417 224.46 wind 9 43200 < th dose independent rect. 20 19
438 224.55 wind 9 43200 < th dose dependent rect. 2 21
446 224.59 wind 3 43200 > th dose independent sin 4 NA
452 224.61 wind 3 43200 > th dose dependent rect. 6 1
462 224.66 humidity 80 43200 < th dose dependent rect. 22 2
504 224.87 humidity 80 14400 > th dose independent rect. 17 1
506 224.87 wind 9 43200 > th dose independent rect. 19 19
515 224.91 wind 9 43200 > th dose dependent sin 18 NA
520 224.92 wind 3 43200 < th dose independent rect. 6 6
573 225.15 wind 3 43200 < th dose independent rect. 3 12
574 225.15 temperature 30 1440 < th dose dependent rect. 18 1
598 225.28 wind 9 43200 > th dose dependent sin 14 NA
607 225.31 wind 9 43200 < th dose dependent no NA NA
612 225.34 wind 3 43200 > th dose independent rect. 20 9
683 225.69 wind 7 43200 > th dose dependent rect. 20 20
690 225.72 wind 7 43200 > th dose dependent rect. 6 15
693 225.73 wind 3 43200 < th dose independent rect. 6 8
709 225.78 wind 9 43200 < th dose dependent rect. 5 23
710 225.79 wind 5 43200 < th dose dependent rect. 19 15
716 225.80 wind 5 43200 < th dose independent rect. 14 20
721 225.84 wind 1 43200 > th dose dependent rect. 19 4
723 225.85 wind 1 43200 > th dose dependent rect. 6 4
733 225.87 wind 9 43200 < th dose dependent rect. 11 23
744 225.91 wind 9 43200 < th dose dependent rect. 19 4
751 225.94 wind 5 43200 < th dose dependent rect. 20 3
757 225.95 wind 7 43200 > th dose dependent rect. 2 19
771 226.00 wind 3 43200 > th dose dependent sin 13 NA
775 226.01 wind 9 43200 < th dose dependent rect. 8 23
776 226.02 wind 3 43200 < th dose independent sin 5 NA
778 226.02 wind 7 43200 > th dose dependent rect. 6 10
785 226.03 wind 9 43200 < th dose independent rect. 13 22
797 226.06 wind 7 43200 > th dose dependent rect. 23 22
799 226.07 wind 3 43200 > th dose independent rect. 20 11
802 226.07 wind 9 43200 > th dose independent rect. 13 22
808 226.11 wind 1 43200 > th dose dependent rect. 20 1
811 226.12 wind 3 43200 < th dose independent rect. 20 9
825 226.17 wind 3 43200 > th dose independent sin 10 NA
834 226.19 temperature 10 14400 > th dose dependent rect. 17 1
886 226.40 wind 5 43200 > th dose independent rect. 14 20
909 226.47 temperature 15 1440 > th dose dependent rect. 4 16
962 226.65 wind 9 43200 < th dose dependent rect. 20 1
963 226.65 wind 7 43200 > th dose dependent rect. 2 14
972 226.68 temperature 20 14400 < th dose independent rect. 21 1
995 226.74 wind 9 43200 > th dose dependent rect. 10 11
1000 226.75 wind 9 43200 > th dose dependent rect. 20 4