BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0523100 Os04g0523100|AK119597
(293 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0523100 Homeodomain-like containing protein 568 e-162
Os02g0631200 Homeodomain-like containing protein 294 4e-80
Os08g0100800 Homeodomain-like containing protein 138 4e-33
Os04g0673000 Homeodomain-like containing protein 130 2e-30
Os05g0305700 Homeodomain-like containing protein 103 2e-22
>Os04g0523100 Homeodomain-like containing protein
Length = 293
Score = 568 bits (1464), Expect = e-162, Method: Compositional matrix adjust.
Identities = 273/293 (93%), Positives = 273/293 (93%)
Query: 1 MADDPSLDFGEFPQPFCSQQVVSFQPSVTTSGSGGMPVYLDCSSGMDSNXXXXXXXXXXX 60
MADDPSLDFGEFPQPFCSQQVVSFQPSVTTSGSGGMPVYLDCSSGMDSN
Sbjct: 1 MADDPSLDFGEFPQPFCSQQVVSFQPSVTTSGSGGMPVYLDCSSGMDSNTVMLSTTPSVV 60
Query: 61 XXXXXXXXXADPGQNLKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSK 120
ADPGQNLKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSK
Sbjct: 61 VSTTSSNTVADPGQNLKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSK 120
Query: 121 TVRDVAMKCQWLGKRENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPVQTDTRVPSF 180
TVRDVAMKCQWLGKRENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPVQTDTRVPSF
Sbjct: 121 TVRDVAMKCQWLGKRENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPVQTDTRVPSF 180
Query: 181 VSHNAIQNNQILTGATGIDRAMQHLLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNIN 240
VSHNAIQNNQILTGATGIDRAMQHLLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNIN
Sbjct: 181 VSHNAIQNNQILTGATGIDRAMQHLLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNIN 240
Query: 241 GLLQTMNQMPGIMSKMPPLPVSVNENLASFVLPGLTVPQFLGGSQLKEEPRGW 293
GLLQTMNQMPGIMSKMPPLPVSVNENLASFVLPGLTVPQFLGGSQLKEEPRGW
Sbjct: 241 GLLQTMNQMPGIMSKMPPLPVSVNENLASFVLPGLTVPQFLGGSQLKEEPRGW 293
>Os02g0631200 Homeodomain-like containing protein
Length = 290
Score = 294 bits (753), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 196/289 (67%), Gaps = 4/289 (1%)
Query: 1 MADDPSLDFGEFPQPFCSQQVVSFQPSVTTSGSGGMPVYLDCSSGMDSNXXXXXXXXXXX 60
M+ +P+ + FP F +Q VVSFQ S +GSG +PV S GM+S+
Sbjct: 3 MSTNPN-HYPVFPHSFRNQHVVSFQTSTIANGSGAIPVCPASSGGMNSDMTLLNTTPSTI 61
Query: 61 XXXXXXXXXADPGQNLKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSK 120
AD Q+LKY P+A DWS EL +L DGL KY NE GIMKYIKIAA LP K
Sbjct: 62 VSTSSPNMLADSNQSLKYAAPMAVDWSYPELQLLNDGLLKYANEPGIMKYIKIAAMLPEK 121
Query: 121 TVRDVAMKCQWLG-KRENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPVQT-DTRVP 178
TVRDVAM+CQW+ K+EN+RRRK+++H+ G+K ++RK KM E S W TN VQT D R P
Sbjct: 122 TVRDVAMRCQWMAAKKENTRRRKTDEHYLGKKTRDRKDKMVESS-WATNRQVQTTDIRSP 180
Query: 179 SFVSHNAIQNNQILTGATGIDRAMQHLLVPNDRLLDQIEANMLACQPQNNIELFHRTRRN 238
S ++ N +++NQ +GA+ IDRAM ++L N R+L QI N++ Q QNNI+LFH RRN
Sbjct: 181 STLACNTVRDNQFQSGASEIDRAMLNILEENARVLKQIGENIMTSQVQNNIDLFHHARRN 240
Query: 239 INGLLQTMNQMPGIMSKMPPLPVSVNENLASFVLPGLTVPQFLGGSQLK 287
I+ LLQ+M+QMPGIMSKMPPLPVS+++ LAS++LPG+ + Q G S L+
Sbjct: 241 ISDLLQSMSQMPGIMSKMPPLPVSIDDRLASYILPGVNLAQVFGSSHLR 289
>Os08g0100800 Homeodomain-like containing protein
Length = 268
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 113/193 (58%), Gaps = 2/193 (1%)
Query: 74 QNLKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSKTVRDVAMKCQWLG 133
+N K+ ADW +L +L DGL +Y +E I+KY KIAA LP++T+RDVA++C+W
Sbjct: 58 RNYKFVTCSPADWPHHDLAILNDGLLRYAHEPNIIKYTKIAAMLPTRTIRDVALRCRWTK 117
Query: 134 KRENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPVQTDTRVPSFVS-HNAIQNNQIL 192
E SRR K + +TG+ ++ K M +L + VP +S H QN+ +
Sbjct: 118 DNE-SRRGKLDQVYTGKMIRGLKDNMVSSTLAANIQIQNPNNMVPFSISMHYQGQNSLLH 176
Query: 193 TGATGIDRAMQHLLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNINGLLQTMNQMPGI 252
+D A QHLL N++LL QI N+ + N++LF RT NI +L+ M++ PGI
Sbjct: 177 KEVPVLDSATQHLLEENNQLLSQIAENIETFKTVENMDLFLRTNNNIRTVLKRMSETPGI 236
Query: 253 MSKMPPLPVSVNE 265
M +MPPLPV VNE
Sbjct: 237 MGQMPPLPVPVNE 249
>Os04g0673000 Homeodomain-like containing protein
Length = 260
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 107/188 (56%), Gaps = 7/188 (3%)
Query: 90 ELDVLKDGLQKYGNEQGIMKYIKIAASLPSKTVRDVAMKCQWLGKRENSRRRKSEDHHTG 149
EL+ LK+GL +Y E IMKYIKIAA LP++TVRDVA++C W ++ RR+K + +TG
Sbjct: 65 ELNTLKEGLVRYAREPNIMKYIKIAAMLPNRTVRDVALRCWWATSKD--RRKKPDGFYTG 122
Query: 150 RKMKERKA---KMAEPSLWGTNHPVQTDTRVPSFVS--HNAIQNNQILTGATGIDRAMQH 204
+K+++ K KM + H +T P +S H Q +D A QH
Sbjct: 123 KKIRDMKPIQDKMVASASMANFHLAPANTVTPFSISMQHTNQQCQVPKEEVPVVDSATQH 182
Query: 205 LLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNINGLLQTMNQMPGIMSKMPPLPVSVN 264
LL N+ LL+QI N+ + N +LF RT N +L M++ PGIM +MP LPV VN
Sbjct: 183 LLEENNHLLNQIATNIETFKTGENTDLFFRTNNNFKNILSRMSETPGIMGQMPQLPVQVN 242
Query: 265 ENLASFVL 272
E+ S +L
Sbjct: 243 EDHLSSLL 250
>Os05g0305700 Homeodomain-like containing protein
Length = 235
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 13/202 (6%)
Query: 76 LKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSKTVRDVAMKCQWLGKR 135
L++ L+ W+ E VL+ GL Y + +++Y KIA +LP KTVRDVA++C+W+ K+
Sbjct: 38 LRHDPGLSVRWTPEEQAVLEGGLASYAADAAVVRYAKIAMNLPDKTVRDVALRCRWMAKK 97
Query: 136 ENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPVQTDTRVPSFVSHNAIQNNQI---- 191
E++++RK E ++ KER + S G H V P + + ++ +
Sbjct: 98 ESNKKRKEESSKKNKEKKERA---NDSSSKGPAHLVARPNAAPYSLPVLPMDDDDVSYKT 154
Query: 192 LTGATGIDRAMQHLLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNINGLLQTMNQMPG 251
+ G TG + ++H N ++L+QI N+ Q Q NI L +TR NI +L+ + +P
Sbjct: 155 IGGQTG--QILEH----NAQILNQIYTNISNMQVQENIPLLCQTRDNILAVLKEIGDVPE 208
Query: 252 IMSKMPPLPVSVNENLASFVLP 273
IM +MPPLPV +NE LA+ +LP
Sbjct: 209 IMRQMPPLPVKLNEELANSMLP 230
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,124,870
Number of extensions: 397000
Number of successful extensions: 999
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 5
Length of query: 293
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 193
Effective length of database: 11,814,401
Effective search space: 2280179393
Effective search space used: 2280179393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)