BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0523100 Os04g0523100|AK119597
(293 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60670.2 | chr1:22344099-22347140 FORWARD LENGTH=255 157 6e-39
AT1G10820.2 | chr1:3601437-3604650 REVERSE LENGTH=259 153 1e-37
AT3G07565.4 | chr3:2413823-2415872 FORWARD LENGTH=269 117 6e-27
AT1G68160.1 | chr1:25546168-25548625 REVERSE LENGTH=274 90 1e-18
AT2G43470.1 | chr2:18049944-18051218 REVERSE LENGTH=211 55 5e-08
>AT1G60670.2 | chr1:22344099-22347140 FORWARD LENGTH=255
Length = 254
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 128/221 (57%), Gaps = 14/221 (6%)
Query: 76 LKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSKTVRDVAMKCQWLGKR 135
LK+ LA DWS E +L+ GL K+ +E + KY+KIAA+LP K+VRDVAM+C+W+ ++
Sbjct: 44 LKHEASLAVDWSVEEQYILEKGLSKFKDEPQVTKYVKIAATLPDKSVRDVAMRCKWMTQK 103
Query: 136 ENSRRRKSEDHHTGRKMKERKAKMAEPSL-WGTNHPVQTDTRVPSFVSHNAIQNNQILTG 194
RRK E+H TG K+ RK P L + P Q T + + +A +
Sbjct: 104 ----RRKGEEHSTGTKVSYRKVVDLPPKLNMFSTEPQQNATYAMNHMCQSARMPFE---- 155
Query: 195 ATGIDRAMQHLLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNINGLLQTMNQMPGIMS 254
G+ A+ L N + QI +N+ C+PQ+N+ LF+ R NI+ +L M +MPGI+S
Sbjct: 156 --GLSDAVMERLRQNAQAFSQISSNLSVCKPQDNVSLFYMARNNISAILNDMKEMPGIIS 213
Query: 255 KMPPLPVSVNENLASFVLPGLTVPQFL---GGSQLKEEPRG 292
+MPPLPVS+N +LAS ++ T P+ LK+EPR
Sbjct: 214 RMPPLPVSINNDLASSLVTSATQPRSYTIPSSIYLKQEPRN 254
>AT1G10820.2 | chr1:3601437-3604650 REVERSE LENGTH=259
Length = 258
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 126/221 (57%), Gaps = 14/221 (6%)
Query: 76 LKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSKTVRDVAMKCQWLGKR 135
+K L DWS E VL++GL K +E I KY+KIAA+LP KTVRDVA++C+W+ ++
Sbjct: 48 VKQEAALVMDWSVEEQYVLENGLAKLKDEPKISKYVKIAATLPDKTVRDVALRCRWMTRK 107
Query: 136 ENSRRRKSEDHHTGRKMKERKAKMAEPSL-WGTNHPVQTDTRVPSFVSHNAIQNNQILTG 194
RRK ED++ + + RK P L +N P Q V + + H+ T
Sbjct: 108 ----RRKREDNNAAKNISTRKVVDTSPELNMLSNVPQQNALYVLNNMCHST------RTP 157
Query: 195 ATGIDRAMQHLLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNINGLLQTMNQMPGIMS 254
G+ A+ LL N + QI N+ AC+ Q+NI LFH+ R NI+ +L M +MPGIMS
Sbjct: 158 FEGLSDAVMDLLQQNAQAFSQISYNLSACKLQDNISLFHQARNNISAILTDMKEMPGIMS 217
Query: 255 KMPPLPVSVNENLASFVLPGLTVPQFLG---GSQLKEEPRG 292
+MP LPVS+N++LAS +L T P LK+EPR
Sbjct: 218 RMPALPVSINDDLASNLLSSTTQPISYNIPPSIHLKQEPRS 258
>AT3G07565.4 | chr3:2413823-2415872 FORWARD LENGTH=269
Length = 268
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 35/219 (15%)
Query: 76 LKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSKTVRDVAMKCQWLGKR 135
L++ ++ DW+ E +L+D L KY E + +Y KIA + KTVRDVA++C+W+ K+
Sbjct: 56 LRHNPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKK 115
Query: 136 ENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPVQTDTRVPSF------------VSH 183
EN +RRK + H+ RK K++K + A S ++ + PS+ +S+
Sbjct: 116 ENGKRRKED--HSSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISY 173
Query: 184 NAIQNNQILTGATGIDRAMQHLLVPNDRLLDQIEANMLACQP---------QNNIELFHR 234
AI G +G LL N ++ +Q+ N A Q N+ + +
Sbjct: 174 KAI------GGVSG------DLLEQNAQMFNQLSTNFSAFQVNSTSTFHLLHENVNILCK 221
Query: 235 TRRNINGLLQTMNQMPGIMSKMPPLPVSVNENLASFVLP 273
R NI +L +N MP +M +MPPLPV +NE LA+ +LP
Sbjct: 222 ARDNILAILNDLNDMPEVMKQMPPLPVKLNEELANSILP 260
>AT1G68160.1 | chr1:25546168-25548625 REVERSE LENGTH=274
Length = 273
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 106/199 (53%), Gaps = 17/199 (8%)
Query: 76 LKYGGPLAADWSRLELDVLKDGLQKYGNEQGIMKYIKIAASLPSKTVRDVAMKCQWLGKR 135
LK + ++WS E +L GL+KY + I YI+I +LP K++RD+A++C +
Sbjct: 70 LKLDTSMVSEWSNEEQYILDAGLEKYKDMPSIDMYIQIGNTLPDKSIRDIALRC----RW 125
Query: 136 ENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPVQTDTRV------PSFVSHNAIQNN 189
+RRKSE+ + GR+ K K E S + V PS + I +
Sbjct: 126 LRRKRRKSEELNCGRRASSSKGKQVESSSKSSIPSVLPHNMASYPFSGPSTSTSKQITSE 185
Query: 190 QILTGATGIDRAMQHLLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNINGLLQTMNQM 249
+ + AT +L+ N R QI AN+ + + +N++LF + R N+ + +N M
Sbjct: 186 DLSSYAT-------NLIEQNVRAFSQIRANLSSYKAGDNLDLFRQARNNLITIQNEINNM 238
Query: 250 PGIMSKMPPLPVSVNENLA 268
PG+M+KMPPLPV++N++L+
Sbjct: 239 PGLMNKMPPLPVTINDDLS 257
>AT2G43470.1 | chr2:18049944-18051218 REVERSE LENGTH=211
Length = 210
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 36/202 (17%)
Query: 82 LAADWSRLELDVLKDGLQKYGNEQ--GIMKYIKIAASLPSKTVRDVAMKCQWLGKRENSR 139
+A +W+ E D+L L Y ++ + +Y++I L KT+RDVA + +W+ ++
Sbjct: 26 IALNWTTAEDDILIQLLDSYSSDSRSAVTRYLQILEFLQDKTIRDVAARSRWIYNKK-IA 84
Query: 140 RRKSEDHH---TGRKMKERKAKMAEPSLWGTNHPVQTDTRVPSFV---SHNAIQNNQILT 193
++K EDH+ T R E M + + PS V S + + N
Sbjct: 85 KKKKEDHNGLGTTRVDNEEIVNMV----------LASQVYQPSQVFQPSQHGVHN----- 129
Query: 194 GATGIDRAMQHLLVPNDRLLDQIEANMLACQPQNNIELFHRTRRNINGLLQTMNQMPGIM 253
LL N + +QI AN+ +N++LF + R NI LL+ +N+ +
Sbjct: 130 ----------ELLNHNKQWFNQIYANLTFLNLTDNLDLFRKIRENIKSLLKDLNE--NVS 177
Query: 254 SKMPPLPVSVNENLASFVLPGL 275
+P S+ E L + GL
Sbjct: 178 ETWKNMPSSLPEKLNDELFLGL 199
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,287,786
Number of extensions: 244053
Number of successful extensions: 662
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 5
Length of query: 293
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,419,801
Effective search space: 1641861195
Effective search space used: 1641861195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)