BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0624500 Os04g0624500|AK108237
(570 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0624500 Similar to Polyphenol oxidase (EC 1.10.3.1) (F... 1028 0.0
Os04g0624300 Similar to Polyphenol oxidase (EC 1.10.3.1) (F... 289 3e-78
Os04g0624400 Tyrosinase family protein 274 1e-73
Os01g0793100 Similar to Polyphenol oxidase (EC 1.10.3.1) (F... 253 2e-67
Os01g0793300 Tyrosinase family protein 217 2e-56
>Os04g0624500 Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment)
Length = 570
Score = 1028 bits (2659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/570 (88%), Positives = 506/570 (88%)
Query: 1 MESINVXXXXXXXXXXXXXXXXXCITNLQSTLRYNNLLLHRKTKGWKPRNVSCRVDRRDV 60
MESINV CITNLQSTLRYNNLLLHRKTKGWKPRNVSCRVDRRDV
Sbjct: 1 MESINVAPGTTATPRMAPPPPPPCITNLQSTLRYNNLLLHRKTKGWKPRNVSCRVDRRDV 60
Query: 61 LLGISGAAAMVATQGGGGALAAPIQAPDLGDCHQPVDVPATAPAINCCPTYSAGTVAVDF 120
LLGISGAAAMVATQGGGGALAAPIQAPDLGDCHQPVDVPATAPAINCCPTYSAGTVAVDF
Sbjct: 61 LLGISGAAAMVATQGGGGALAAPIQAPDLGDCHQPVDVPATAPAINCCPTYSAGTVAVDF 120
Query: 121 APPPASSPLRVRPAAHLADRAYLAKYERAVSLMKKLPADDPRSFEQQWRVHCAYCDGAYD 180
APPPASSPLRVRPAAHLADRAYLAKYERAVSLMKKLPADDPRSFEQQWRVHCAYCDGAYD
Sbjct: 121 APPPASSPLRVRPAAHLADRAYLAKYERAVSLMKKLPADDPRSFEQQWRVHCAYCDGAYD 180
Query: 181 QVGFPGLEIQIHSCWLFFPWHRMYLYFHERILGKLIGDETFALPFWNWDAPDGMSFPAMY 240
QVGFPGLEIQIHSCWLFFPWHRMYLYFHERILGKLIGDETFALPFWNWDAPDGMSFPAMY
Sbjct: 181 QVGFPGLEIQIHSCWLFFPWHRMYLYFHERILGKLIGDETFALPFWNWDAPDGMSFPAMY 240
Query: 241 ANRWSPLYDPRRNQAHLPPFPLDLDYSGTDTNIPKDQLIDQNLNIMYRQMISGARKAELF 300
ANRWSPLYDPRRNQAHLPPFPLDLDYSGTDTNIPKDQLIDQNLNIMYRQMISGARKAELF
Sbjct: 241 ANRWSPLYDPRRNQAHLPPFPLDLDYSGTDTNIPKDQLIDQNLNIMYRQMISGARKAELF 300
Query: 301 MGQPYRAGDQPEPGAGTVESVPHNPVHRWTGDPRQPNGEDMGIFYSAARDPVFFAHHGNV 360
MGQPYRAGDQPEPGAGTVESVPHNPVHRWTGDPRQPNGEDMGIFYSAARDPVFFAHHGNV
Sbjct: 301 MGQPYRAGDQPEPGAGTVESVPHNPVHRWTGDPRQPNGEDMGIFYSAARDPVFFAHHGNV 360
Query: 361 DRMWHIRRGLLFPGDTDFTDPDWLDASFFFYDEEARLXXXXXXDTLDPSALRFTYQDVGL 420
DRMWHIRRGLLFPGDTDFTDPDWLDASFFFYDEEARL DTLDPSALRFTYQDVGL
Sbjct: 361 DRMWHIRRGLLFPGDTDFTDPDWLDASFFFYDEEARLVRVRVRDTLDPSALRFTYQDVGL 420
Query: 421 PWLNXXXXXXXXXXXXXXXXXXXXTLDKTVRVAVTRPRASRSRXXXXXXXXXXIPDHSTY 480
PWLN TLDKTVRVAVTRPRASRSR IPDHSTY
Sbjct: 421 PWLNAKPSTGAASTPAPAAGAFPATLDKTVRVAVTRPRASRSREEKEEEEEVEIPDHSTY 480
Query: 481 VKFDVFVNAPESGDXXXXXXXXXXXSVALAPHGIHREGQLSPRKTEARFGICDLLDDIGA 540
VKFDVFVNAPESGD SVALAPHGIHREGQLSPRKTEARFGICDLLDDIGA
Sbjct: 481 VKFDVFVNAPESGDGAATCAATCAGSVALAPHGIHREGQLSPRKTEARFGICDLLDDIGA 540
Query: 541 DGDKTIVVSIVPRCGCDSVTVAGVSIGYAK 570
DGDKTIVVSIVPRCGCDSVTVAGVSIGYAK
Sbjct: 541 DGDKTIVVSIVPRCGCDSVTVAGVSIGYAK 570
>Os04g0624300 Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment)
Length = 213
Score = 289 bits (740), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 164/216 (75%), Gaps = 20/216 (9%)
Query: 1 MESINVXXXXXXXXXXXXXXXXXCITNLQSTLRYNNLLLHR--KTKGWKPRNVSCRVDRR 58
MESINV CI+NLQ TL YN LLLHR KT G K R+VSCR
Sbjct: 1 MESINVARGASVTPRMALP----CISNLQ-TLHYN-LLLHRNRKTNGRKLRSVSCRASAG 54
Query: 59 D----------VLLGISGAAAMVATQGGGGALAAPIQAPDLGDCHQPVDVPA--TAPAIN 106
VLLGI AAAMVATQGGGGALAAPIQAPDLG CH+PVD+P TAP I+
Sbjct: 55 RGGGRGLDRRDVLLGIGAAAAMVATQGGGGALAAPIQAPDLGHCHEPVDLPDPDTAPEIS 114
Query: 107 CCPTYSAGTVAVDFAPPPASSPLRVRPAAHLADRAYLAKYERAVSLMKKLPADDPRSFEQ 166
CCPTYSAGTVAVDF PPPASSPLRVRPAAHL D AYL KYERAVSLMKKLPADDPRSF+Q
Sbjct: 115 CCPTYSAGTVAVDFTPPPASSPLRVRPAAHLVDIAYLTKYERAVSLMKKLPADDPRSFKQ 174
Query: 167 QWRVHCAYCDGAYDQVGFPGLEIQIHSCWLFFPWHR 202
QWRVHCAYCDGAYDQVGFPGLEIQIHSCW FFPWHR
Sbjct: 175 QWRVHCAYCDGAYDQVGFPGLEIQIHSCWFFFPWHR 210
>Os04g0624400 Tyrosinase family protein
Length = 208
Score = 274 bits (701), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/212 (67%), Positives = 154/212 (72%), Gaps = 15/212 (7%)
Query: 290 MISGARKAELFMGQPYRAGDQPEPGAGTVESVPHNPVHRWTGDPRQPNGEDMGIFYSAAR 349
MISGARK ELFMG PY AGDQP+PGAGTVE V HN VH WTGDPRQPNGEDMG+FYSAAR
Sbjct: 1 MISGARKKELFMGHPYSAGDQPKPGAGTVEFVLHNTVHNWTGDPRQPNGEDMGMFYSAAR 60
Query: 350 DPVFFAHHGNVDRMWHIRRGLLFPGDTDFTDPDWLDASFFFYDEEARLXXXXXXDTLDPS 409
DPVFFAHHGNVDRMW+IR G LFP DTDFTDPDWLDA+F FYDEEARL D+LD +
Sbjct: 61 DPVFFAHHGNVDRMWYIRHG-LFPRDTDFTDPDWLDATFLFYDEEARLVRVRVRDSLDEA 119
Query: 410 ALRFTYQDVG-LPWLNXXXXXXXXXXXXXXXXXXXXTLDKTVRVAVTRPRASRSRXXXXX 468
ALR+TYQDVG LPWLN TLDKTVRVA+TRP+ SRSR
Sbjct: 120 ALRYTYQDVGPLPWLN-------AKPSTGPAGALPGTLDKTVRVALTRPKTSRSRKEKDA 172
Query: 469 XXXX------XIPDHSTYVKFDVFVNAPESGD 494
+PDHS YVKFDVFVNAPE+ D
Sbjct: 173 EEEAPVIEGIEVPDHSAYVKFDVFVNAPENAD 204
>Os01g0793100 Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment)
Length = 356
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 132/240 (55%), Positives = 164/240 (68%), Gaps = 8/240 (3%)
Query: 54 RVDRRDVLLGISGAAAM-----VATQGGGGALAAPIQAPDLGDCHQPVDVPATAPAINCC 108
R+DRRDVLLG+ A A + A A P+ PD+ C P +P +A + CC
Sbjct: 49 RLDRRDVLLGLGAAGASATAAGILLSFPRRAGADPVATPDISSCGPPDQLPPSANVLTCC 108
Query: 109 PTYSAGTVAVDFAPPP--ASSPLRVRPAAHLADRAYLAKYERAVSLMKKLPADDPRSFEQ 166
P S+ + VDFAPP +SSPLR RPAAH A Y+AK+ RA++ MK LPADDPRSF
Sbjct: 109 PPPSSAS-PVDFAPPADASSSPLRTRPAAHSAGADYVAKFNRAIAAMKALPADDPRSFAA 167
Query: 167 QWRVHCAYCDGAYDQVGFPGLEIQIHSCWLFFPWHRMYLYFHERILGKLIGDETFALPFW 226
Q VHCAYCDG+Y GFPGL++Q+H+ WLF P+HR YLYF ERILG LIGD TFA+PFW
Sbjct: 168 QASVHCAYCDGSYSPDGFPGLDLQVHNSWLFMPFHRCYLYFFERILGSLIGDPTFAIPFW 227
Query: 227 NWDAPDGMSFPAMYANRWSPLYDPRRNQAHLPPFPLDLDYSGTDTNIPKDQLIDQNLNIM 286
NWDAPDGM PAMY ++ SPL+DPRRN H+PP +DLDY+G + +Q +D NL +M
Sbjct: 228 NWDAPDGMRMPAMYTDQSSPLFDPRRNGRHVPPKLIDLDYNGREPRFTDNQQVDHNLRVM 287
>Os01g0793300 Tyrosinase family protein
Length = 313
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 147/255 (57%), Gaps = 18/255 (7%)
Query: 43 TKGWKPRNVSCRVDRRDVLLGISGAAAMVATQGG-----GGALAAPIQAPDLGDCHQPVD 97
G P VSC D G + + + GG G + PI DL C +P +
Sbjct: 46 VTGLDPYVVSCAAD--------DGVSTPLLSDGGHDKINAGRVGGPI-VTDLLQCRKP-E 95
Query: 98 VPATAPAINCCPTYSAGTVAVDFAPPPASSPLRVRPAAHLADRAYLAKYERAVSLMKKLP 157
P + CCP +DF P S PLR R AH+A Y+AKYERA++LMK LP
Sbjct: 96 GPDFPEDLQCCPPMPTSE-PIDFTLPDPSEPLRTRRPAHVAGAEYMAKYERAIALMKALP 154
Query: 158 ADDPRSFEQQWRVHCAYCDGAYDQVGFPGLEIQIHSCWLFFPWHRMYLYFHERILGKLIG 217
DPRSF QQ +HCAYC GAY QVG P L +Q+H WLFFP+HR YLYF ERI GKL+G
Sbjct: 155 RSDPRSFYQQAHIHCAYCTGAYRQVGHPELAVQVHFSWLFFPFHRAYLYFFERIAGKLLG 214
Query: 218 DETFALPFWNWDAPDGMSFPAMYANRWSPLYDPRRNQAHLPPFPLDLDYSG--TDTNIPK 275
D FA+PFW+WD P+GM P +AN SPLYD RN H PP +DLDY+ + N
Sbjct: 215 DPGFAVPFWSWDVPEGMRMPLQFANASSPLYDQMRNPWHAPPKLVDLDYAMDVVENNYTD 274
Query: 276 DQLIDQNLNIMYRQM 290
D+ I NL IMY+Q+
Sbjct: 275 DEQIKHNLWIMYKQV 289
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,591,989
Number of extensions: 978977
Number of successful extensions: 2611
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2603
Number of HSP's successfully gapped: 5
Length of query: 570
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 464
Effective length of database: 11,501,117
Effective search space: 5336518288
Effective search space used: 5336518288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)