Os01g0793100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment).
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Os01g0793100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 366.65 | 0.9 | 3.07 | -0.256 | 0.0302 | 2.46 | -0.39 | -9.18 | -0.266 | 1.77 | 999.9 | 83 | -- | -- |
| 369.1 | 0.902 | 2.96 | 0.348 | 0.0433 | 0.782 | -0.349 | -- | -0.268 | 1.61 | 999.9 | 83 | -- | -- |
| 367.22 | 0.893 | 3.06 | -0.22 | 0.0352 | 2.4 | -- | -8.81 | -0.263 | 23.5 | 999.9 | 83 | -- | -- |
| 368.29 | 0.894 | 2.96 | 0.35 | 0.0433 | 0.832 | -- | -- | -0.265 | 1.4 | 999.8 | 83 | -- | -- |
| 367.3 | 0.893 | 3.06 | -0.226 | -- | 2.42 | -- | -8.92 | -0.263 | -- | 999.9 | 83 | -- | -- |
| 385.86 | 0.921 | 2.97 | 0.487 | 0.0223 | -- | -0.414 | -- | -0.321 | 1.92 | -- | -- | -- | -- |
| 386.49 | 0.921 | 2.97 | 0.5 | 0.0324 | -- | -- | -- | -0.318 | 22.5 | -- | -- | -- | -- |
| 368.13 | 0.894 | 2.96 | 0.354 | -- | 0.836 | -- | -- | -0.264 | -- | 999.7 | 76 | -- | -- |
| 371.16 | 0.897 | 2.97 | -- | 0.0519 | 0.902 | -- | -- | -0.298 | 0.0802 | 999.7 | 76 | -- | -- |
| 386.55 | 0.919 | 2.97 | 0.5 | -- | -- | -- | -- | -0.318 | -- | -- | -- | -- | -- |
| 393.07 | 0.927 | 2.98 | -- | 0.0367 | -- | -- | -- | -0.373 | 23.5 | -- | -- | -- | -- |
| 371.33 | 0.897 | 2.97 | -- | -- | 0.9 | -- | -- | -0.297 | -- | 999.7 | 76 | -- | -- |
| 393.16 | 0.926 | 2.98 | -- | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 353.72 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 8 | 23 |
| 4 | 354.34 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 5 | 354.40 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 8 | 355.39 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 15 | 355.39 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 40 | 356.83 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 43 | 357.68 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 2 | 18 |
| 47 | 358.34 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 10 | 19 |
| 57 | 359.34 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 3 | 18 |
| 67 | 359.80 | radiation | 20.0 | 30 | > th | dose independent | rect. | 16 | 16 |
| 69 | 359.93 | radiation | 20.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 90 | 360.36 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 18 | 2 |
| 91 | 360.36 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 18 | 2 |
| 104 | 360.69 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 107 | 360.77 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 10 | 10 |
| 136 | 361.36 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 146 | 361.65 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 8 | 10 |
| 178 | 362.25 | wind | 1.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 197 | 362.74 | wind | 3.0 | 10 | > th | dose dependent | rect. | 24 | 1 |
| 208 | 362.88 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 9 | 10 |
| 220 | 362.99 | atmosphere | 1005.0 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 260 | 363.36 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 24 | 4 |
| 270 | 363.49 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 8 | 15 |
| 313 | 364.00 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 23 | 21 |
| 352 | 364.31 | temperature | 25.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 366 | 364.40 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 9 | 13 |
| 371 | 364.46 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 7 | 14 |
| 385 | 364.59 | wind | 5.0 | 90 | > th | dose independent | rect. | 22 | 2 |
| 392 | 364.63 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 10 | 10 |
| 397 | 364.68 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 423 | 364.79 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 2 | 10 |
| 425 | 364.80 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 436 | 364.89 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 481 | 365.03 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 603 | 365.51 | wind | 5.0 | 30 | > th | dose independent | rect. | 23 | 9 |
| 659 | 365.78 | humidity | 70.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 660 | 365.78 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 23 |
| 744 | 366.20 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 8 | 14 |
| 761 | 366.24 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 15 | 14 |
| 768 | 366.27 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 22 | 1 |
| 770 | 366.27 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 838 | 366.68 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 14 | 22 |
| 875 | 366.73 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 884 | 366.81 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 886 | 366.82 | wind | 7.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 903 | 366.92 | wind | 3.0 | 10 | > th | dose dependent | rect. | 23 | 9 |
| 914 | 366.96 | atmosphere | 1005.0 | 270 | < th | dose independent | sin | 4 | NA |
| 915 | 366.96 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 24 | 12 |
| 916 | 366.97 | wind | 1.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 917 | 366.99 | atmosphere | 1000.0 | 90 | < th | dose independent | no | NA | NA |
| 921 | 367.00 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 24 | 13 |
| 945 | 367.03 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 948 | 367.05 | wind | 3.0 | 10 | > th | dose independent | rect. | 24 | 1 |
| 952 | 367.06 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 16 | 20 |
| 961 | 367.10 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 14 | 23 |
| 984 | 367.17 | wind | 1.0 | 90 | < th | dose dependent | rect. | 6 | 9 |