BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0793100 Os01g0793100|Os01g0793100
(356 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0793100 Similar to Polyphenol oxidase (EC 1.10.3.1) (F... 590 e-169
Os04g0624500 Similar to Polyphenol oxidase (EC 1.10.3.1) (F... 253 2e-67
Os01g0793300 Tyrosinase family protein 233 2e-61
Os04g0624300 Similar to Polyphenol oxidase (EC 1.10.3.1) (F... 129 3e-30
>Os01g0793100 Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment)
Length = 356
Score = 590 bits (1521), Expect = e-169, Method: Compositional matrix adjust.
Identities = 299/356 (83%), Positives = 299/356 (83%)
Query: 1 MASLSQLITCXXXXXXXXXXGASFCLKPRRGAVGRVSCTSSPAEPDASXXXXXXXXXXXX 60
MASLSQLITC GASFCLKPRRGAVGRVSCTSSPAEPDAS
Sbjct: 1 MASLSQLITCSLSSPSPSSPGASFCLKPRRGAVGRVSCTSSPAEPDASRLDRRDVLLGLG 60
Query: 61 XXXXXXXXXXXXXSFPRRAGADPVATPDISSCGPPDQLPPSANVLTCCPPPSSASPVDFA 120
SFPRRAGADPVATPDISSCGPPDQLPPSANVLTCCPPPSSASPVDFA
Sbjct: 61 AAGASATAAGILLSFPRRAGADPVATPDISSCGPPDQLPPSANVLTCCPPPSSASPVDFA 120
Query: 121 PPADASSSPLRTRPAAHSAGADYVAKFNRAIAAMKALPADDPRSFAAQASVHCAYCDGSY 180
PPADASSSPLRTRPAAHSAGADYVAKFNRAIAAMKALPADDPRSFAAQASVHCAYCDGSY
Sbjct: 121 PPADASSSPLRTRPAAHSAGADYVAKFNRAIAAMKALPADDPRSFAAQASVHCAYCDGSY 180
Query: 181 SPDGFPGLDLQVHNSWLFMPFHRCYLYFFERILGSLIGDPTFAIPFWNWDAPDGMRMPAM 240
SPDGFPGLDLQVHNSWLFMPFHRCYLYFFERILGSLIGDPTFAIPFWNWDAPDGMRMPAM
Sbjct: 181 SPDGFPGLDLQVHNSWLFMPFHRCYLYFFERILGSLIGDPTFAIPFWNWDAPDGMRMPAM 240
Query: 241 YTDQSSPLFDPRRNGRHVPPKLIDLDYNGREPRFTDNQQVDHNLRVMCLPDMXXXXXXXX 300
YTDQSSPLFDPRRNGRHVPPKLIDLDYNGREPRFTDNQQVDHNLRVMCLPDM
Sbjct: 241 YTDQSSPLFDPRRNGRHVPPKLIDLDYNGREPRFTDNQQVDHNLRVMCLPDMAVPAEEEE 300
Query: 301 XXXXXXXXXXXXXXQDSEGIRRQDEEEDIQTNTQVPVRPSRTMKPNPRYHGPEWAV 356
QDSEGIRRQDEEEDIQTNTQVPVRPSRTMKPNPRYHGPEWAV
Sbjct: 301 KEGEPEADEEPTDDQDSEGIRRQDEEEDIQTNTQVPVRPSRTMKPNPRYHGPEWAV 356
>Os04g0624500 Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment)
Length = 570
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/210 (57%), Positives = 150/210 (71%), Gaps = 3/210 (1%)
Query: 79 AGADPVATPDISSCGPPDQLPPSANVLTCCPPPSSAS-PVDFAPPADASSSPLRTRPAAH 137
A A P+ PD+ C P +P +A + CCP S+ + VDFAPP +SSPLR RPAAH
Sbjct: 79 ALAAPIQAPDLGDCHQPVDVPATAPAINCCPTYSAGTVAVDFAPPP--ASSPLRVRPAAH 136
Query: 138 SAGADYVAKFNRAIAAMKALPADDPRSFAAQASVHCAYCDGSYSPDGFPGLDLQVHNSWL 197
A Y+AK+ RA++ MK LPADDPRSF Q VHCAYCDG+Y GFPGL++Q+H+ WL
Sbjct: 137 LADRAYLAKYERAVSLMKKLPADDPRSFEQQWRVHCAYCDGAYDQVGFPGLEIQIHSCWL 196
Query: 198 FMPFHRCYLYFFERILGSLIGDPTFAIPFWNWDAPDGMRMPAMYTDQSSPLFDPRRNGRH 257
F P+HR YLYF ERILG LIGD TFA+PFWNWDAPDGM PAMY ++ SPL+DPRRN H
Sbjct: 197 FFPWHRMYLYFHERILGKLIGDETFALPFWNWDAPDGMSFPAMYANRWSPLYDPRRNQAH 256
Query: 258 VPPKLIDLDYNGREPRFTDNQQVDHNLRVM 287
+PP +DLDY+G + +Q +D NL +M
Sbjct: 257 LPPFPLDLDYSGTDTNIPKDQLIDQNLNIM 286
>Os01g0793300 Tyrosinase family protein
Length = 313
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/212 (55%), Positives = 144/212 (67%), Gaps = 7/212 (3%)
Query: 78 RAGADPVATPDISSCGPPDQLPPSANVLTCCPPPSSASPVDFAPPADASSSPLRTRPAAH 137
R G P+ T D+ C P+ P L CCPP ++ P+DF P S PLRTR AH
Sbjct: 79 RVGG-PIVT-DLLQCRKPEG-PDFPEDLQCCPPMPTSEPIDFTLPD--PSEPLRTRRPAH 133
Query: 138 SAGADYVAKFNRAIAAMKALPADDPRSFAAQASVHCAYCDGSYSPDGFPGLDLQVHNSWL 197
AGA+Y+AK+ RAIA MKALP DPRSF QA +HCAYC G+Y G P L +QVH SWL
Sbjct: 134 VAGAEYMAKYERAIALMKALPRSDPRSFYQQAHIHCAYCTGAYRQVGHPELAVQVHFSWL 193
Query: 198 FMPFHRCYLYFFERILGSLIGDPTFAIPFWNWDAPDGMRMPAMYTDQSSPLFDPRRNGRH 257
F PFHR YLYFFERI G L+GDP FA+PFW+WD P+GMRMP + + SSPL+D RN H
Sbjct: 194 FFPFHRAYLYFFERIAGKLLGDPGFAVPFWSWDVPEGMRMPLQFANASSPLYDQMRNPWH 253
Query: 258 VPPKLIDLDY--NGREPRFTDNQQVDHNLRVM 287
PPKL+DLDY + E +TD++Q+ HNL +M
Sbjct: 254 APPKLVDLDYAMDVVENNYTDDEQIKHNLWIM 285
>Os04g0624300 Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment)
Length = 213
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 79 AGADPVATPDISSCGPPDQLPP--SANVLTCCPPPSSAS-PVDFAPPADASSSPLRTRPA 135
A A P+ PD+ C P LP +A ++CCP S+ + VDF PP +SSPLR RPA
Sbjct: 85 ALAAPIQAPDLGHCHEPVDLPDPDTAPEISCCPTYSAGTVAVDFTPPP--ASSPLRVRPA 142
Query: 136 AHSAGADYVAKFNRAIAAMKALPADDPRSFAAQASVHCAYCDGSYSPDGFPGLDLQVHNS 195
AH Y+ K+ RA++ MK LPADDPRSF Q VHCAYCDG+Y GFPGL++Q+H+
Sbjct: 143 AHLVDIAYLTKYERAVSLMKKLPADDPRSFKQQWRVHCAYCDGAYDQVGFPGLEIQIHSC 202
Query: 196 WLFMPFHR 203
W F P+HR
Sbjct: 203 WFFFPWHR 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,508,175
Number of extensions: 633138
Number of successful extensions: 3910
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3903
Number of HSP's successfully gapped: 4
Length of query: 356
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 254
Effective length of database: 11,709,973
Effective search space: 2974333142
Effective search space used: 2974333142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)